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Fix issue 1795 #1796

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Merged
IAlibay merged 2 commits into from
Jan 16, 2026
Merged

Fix issue 1795 #1796

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69a9e11
Update method name in CLI YAML documentation
IAlibay Jan 16, 2026
d67ce02
Fix command option case in CLI YAML guide
IAlibay Jan 16, 2026
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4 changes: 2 additions & 2 deletions docs/guide/cli/cli_yaml.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ This settings file has a series of sections for customising the different algori
For example, the settings file which re-specifies the default behaviour would look like ::

network:
method: plan_minimal_spanning_tree
method: generate_minimal_spanning_network
mapper:
method: LomapAtomMapper
settings:
Expand All @@ -29,7 +29,7 @@ All sections of the file ``network:``, ``mapper:`` and ``partial_charge:`` are

The settings YAML file is then provided to the ``-s`` option of ``openfe plan-rbfe-network``: ::

openfe plan-rbfe-network -M molecules.sdf -P protein.pdb -s settings.yaml
openfe plan-rbfe-network -M molecules.sdf -p protein.pdb -s settings.yaml

Customising the atom mapper
---------------------------
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