OpenCloning_LinkML

A LinkML data model for OpenCloning, a standardized schema for describing molecular cloning strategies and DNA assembly protocols.

Website

You can access the model documentation at https://opencloning.github.io/OpenCloning_LinkML

Migration from previous versions of the schema

If you have json files in older formats, you can migrate them to the latest version using the migrate command:

python -m opencloning_linkml.migrations.migrate file.json

This will create a new file with the same name but with the suffix _backup.json with the original data, and overwrite the original file with the migrated data.

You can also specify a target version to migrate to:

python -m opencloning_linkml.migrations.migrate file.json --target-version 0.2.9

And you can skip the backup (simply edit in place):

python -m opencloning_linkml.migrations.migrate file.json --no-backup

Developer Documentation

The python package can be installed from PyPI:

pip install opencloning-linkml

Use the `make` command to generate project artefacts:

• make all: make everything
• make deploy: deploys site

Credits

This project was made with linkml-project-cookiecutter.