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Custodial update, realigning docs and tests - #46

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HuiJun merged 41 commits into
Open-MBEE:mainfrom
JPL-Devin:main
Aug 7, 2026
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Custodial update, realigning docs and tests#46
HuiJun merged 41 commits into
Open-MBEE:mainfrom
JPL-Devin:main

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@HuiJun HuiJun commented Aug 7, 2026

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Summary

Upstreams the work done on the JPL-Devin/Systemica fork since it was resynced from Open-MBEE/Systemica@97b5edd: 41 commits, 8 already-reviewed-and-merged changes on the fork, fast-forwardable (fork is 41 ahead / 0 behind). Six of the eight are semantic or parser correctness fixes; the corpus gate moves 81/100 → 88/100 clean as a result.

Resolution and semantics (the substance)

  • perform / references contribute members. A usage that references another feature (perform a;, ref x ::> y) now contributes that feature's members to resolution, instead of the reference being a dead end.

  • satisfy usages are not typed by the referenced requirement. The type checker was reporting false positives on legal satisfy/SatisfyRequirementUsage models; per the spec the usage's type comes from the standard library element, not from the referenced requirement.

  • Implicit redefinition of behavior/step parameters is positional, not name-based (KerML 7.4.7.2/7.4.7.3). The old name-matching guard is deleted rather than patched, and a test that encoded the name-based behavior was rewritten:

    - if declaredName == inheritedName { redefine(inherited) }
    + redefine(inheritedParameters[position])   // names need not match
    

    A parameter that a declaration cannot legally redefine now stays inherited, and an implicitly redefining parameter keeps its standard-library base.

  • if/else branch bodies are namespaces, so features declared in a branch resolve inside it.

  • Message payload features declared in an of clause are registered, so flow of Payload … payload members resolve.

Notation

  • Textual notation for history pseudostates (history / shallow history / deep history), deferred events (defer E1, E2;) and entry/exit point pseudostates, wired through the parser, lowering and the runtime. The OMG textual grammar has no production for any pseudostate or for deferral, so these are documented as a Systemica extension in docs/grammar/README.md, not as standard notation. point is matched contextually rather than reserved, since models routinely declare features named point.

Test coverage and docs

  • gRPC Layer 2 conformance harness (internal/grpc/conformance_test.go): two fixtures were checked in but read by no test. Now 5 fixture pairs cover Evaluate / Instantiate / ExecuteAction / ExecuteState, asserting the protobuf oneof arm and payload, slots, outputs, state visitation and expected errors.
  • docs/SPEC_COMPLIANCE.md and docs/TRAINING_EXAMPLES.md recounted against reality, with a per-file verdict recorded for every corpus expectation change (training_examples_expected.txt was adjudicated file-by-file, never regenerated).

macOS distribution

  • docs/MACOS_DISTRIBUTION.md documents the actual cause of the install prompt: it is com.apple.quarantine, not a missing signature — Go's linker already ad-hoc signs darwin/arm64 even when cross-compiled from Linux (verified flags=0x20002 in the Mach-O CodeDirectory of a binary built the way build-release does), so ad-hoc codesign -s - in CI would fix nothing. Removing the prompt entirely requires Developer ID signing + notarization, recorded as a decision record with the exact credentials and runner it needs.
  • Release artifacts gain SHA256SUMS.txt and per-platform bundles; packaging/homebrew/ carries a formula template and scripts/render-homebrew-formula.sh. Homebrew is the interim low-friction path (Homebrew-installed binaries are not quarantined) and targets a tap the maintainer will create; nothing here creates or assumes that repo exists.

Verification

CI was unavailable on the fork, so every one of the 8 changes was gated locally, and the merge result at 6bd3ea4 was re-verified end to end:

gofmt -l .          # clean
go build ./... && go vet ./...
go test ./...       # pass
go test -race ./... # pass
make lint           # 0 findings
./scripts/download-training-examples.sh
go test ./internal/core/model/ -run TestTrainingExamples   # 88/100 clean (12 files, 29 errors)

Note that the corpus gate does not run in CI on either repo — neither workflow downloads the corpus, so TestTrainingExamples silently skips there. The 88/100 above is local evidence; adding the download to CI is a recommended follow-up.

Other gates at 6bd3ea4: stdlib parser conformance 94/94, execution conformance 51 cases, golden execution traces 22, runtime robustness 29 subtests, gRPC conformance 5 cases, golden AST fixtures 30, negative parser subtests 32.

Known issues in this branch

  • docs/SPEC_COMPLIANCE.md / docs/TRAINING_EXAMPLES.md state 81/100 in places; the later merges took the corpus to 88/100 and the recount has not landed yet.
  • The remaining 29 corpus errors span 12 files. 5 of them across 3 files are bugs in the OMG material itself (start/done vs startShot/endShot; the alternative typo), so 95/100 is the material ceiling without changing upstream files.
  • The 3 errors in Verification Case Definition Example are likely ours, not the file's: its private import VerificationCases::*; sits inside the verification def body and imports owned by a non-package namespace do not appear to be applied. The checked-in verdict currently blames the file and needs re-adjudication.
  • entry <actionName>; (an entry action by reference, rather than an inline body) still fails to parse: expected a body member.

devin-ai-integration Bot and others added 30 commits August 6, 2026 22:49
…formance cases

Re-counts the stale numbers in docs/SPEC_COMPLIANCE.md and docs/TRAINING_EXAMPLES.md from actual runs (execution conformance 43/43, corpus 81/100, robustness 27, golden AST 24, negative parser 19) and records that the corpus gate skips in CI.

Resolves the standing gRPC Layer 2 gap instead of leaving it as a to-do: internal/grpc/conformance_test.go drives Evaluate, Instantiate, ExecuteAction and ExecuteState from .sysml + .expected.json pairs through the ParseFile RPC, adopting the two fixtures that were checked in but never consumed by any test.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Add ast.IfBranchNode so each branch of an if action is an element that can own a scope. Declarations in a branch body are members of the branch: they resolve inside it, do not escape to the enclosing behavior or the sibling branch, and are body-local (excluded from recursive imports and the REPL scope-tree search), matching loop bodies.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…f clause

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…s and checksums

Root cause is the com.apple.quarantine attribute, not a missing signature:
Go's linker already emits an ad-hoc (linker-signed) signature for
darwin/arm64 even when cross-compiling from Linux.

- README/QUICKSTART: curl and go install paths, quarantine escape hatch
- build-release: systemica-<os>-<arch> bundles + SHA256SUMS.txt
- packaging/homebrew: formula template + render script (no tap created)
- docs/MACOS_DISTRIBUTION.md: notarization decision record

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
… deferred events

Declare history (shallow/deep), entry/exit point pseudostates and event
deferral in a state body, lowered onto the existing runtime support.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
A parameter of a behavior or step implicitly redefines the parameter at the
same position of each behavior or step its owner specializes (KerML 7.4.7.2,
7.4.7.3; SysML v2 7.17.2), and a result parameter redefines the general
calculation's result whatever its position (SysML v2 7.19.2). Redefinition is a
generalization, so the parameter takes the redefined parameter's type when it
declares none: 'out item image;' in 'action focus : Focus' is now typed by
'Image' and 'focus.image.isWellFocused' resolves.

Replaces the name-based rule in implicitBase, which left any usage shadowing a
like-named inherited feature untyped; the specification has no such rule, and a
like-named nested usage is a name conflict, so it now takes the standard
library base of its kind like any other untyped usage.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
A `perform` action usage relates the action it performs by a reference
subsetting (SysML 7.17.6, KerML 8.3.3.3.9), so the referenced action's
members are visible on the performing usage. Model that as a distinct
member-contribution relation (`Model.ReferencedFeature` /
`Model.MemberSources`) consumed by member lookup, deliberately outside
`DirectSupertypes` so conformance and implicit typing are unaffected.

An unnamed usage takes the effective name of the feature it references,
and that name is bound in the scope the reference itself resolves in, so
reference targets resolve outside their own binding
(`resolve.Resolver.ReferenceScope`).

Also distinguishes the `via`, `about` and `by` clauses, which named
related elements through the same relationship kind without being
subsettings, and parses `allocate a to b` as an anonymous binary
allocation.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…t tap formula

- packaging/homebrew/Formula/systemica.rb: real formula (renderable) with
  per-platform urls/checksums, install of both binaries, and a test block
- packaging/homebrew/README.md: exact steps to create Open-MBEE/homebrew-tap
  and to bump the formula each release
- render script: reads the formula source, fails on leftover placeholders
- README/QUICKSTART: brew tap Open-MBEE/tap first, direct download + xattr fallback

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…c-conformance

Re-counts the stale numbers in docs/SPEC_COMPLIANCE.md and docs/TRAINING_EXAMPLES.md from actual runs (execution conformance 43/43, corpus 81/100, robustness 27, golden AST 24, negative parser 19) and records that the corpus gate skips in CI.

Resolves the standing gRPC Layer 2 gap instead of leaving it as a to-do: internal/grpc/conformance_test.go drives Evaluate, Instantiate, ExecuteAction and ExecuteState from .sysml + .expected.json pairs through the ParseFile RPC, adopting the two fixtures that were checked in but never consumed by any test.

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
…ng it

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…spaces

Add ast.IfBranchNode so each branch of an if action is an element that can own a scope. Declarations in a branch body are members of the branch: they resolve inside it, do not escape to the enclosing behavior or the sibling branch, and are body-local (excluded from recursive imports and the REPL scope-tree search), matching loop bodies.

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…own name

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…ember

* fix(parser,resolve): register the payload a message declares in its of clause

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(parser): give a declared flow payload its own source span

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

---------

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
* docs(release): document macOS Gatekeeper install path; publish bundles and checksums

Root cause is the com.apple.quarantine attribute, not a missing signature:
Go's linker already emits an ad-hoc (linker-signed) signature for
darwin/arm64 even when cross-compiling from Linux.

- README/QUICKSTART: curl and go install paths, quarantine escape hatch
- build-release: systemica-<os>-<arch> bundles + SHA256SUMS.txt
- packaging/homebrew: formula template + render script (no tap created)
- docs/MACOS_DISTRIBUTION.md: notarization decision record

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* docs(packaging): make brew the recommended macOS path; ready-to-commit tap formula

- packaging/homebrew/Formula/systemica.rb: real formula (renderable) with
  per-platform urls/checksums, install of both binaries, and a test block
- packaging/homebrew/README.md: exact steps to create Open-MBEE/homebrew-tap
  and to bump the formula each release
- render script: reads the formula source, fails on leftover placeholders
- README/QUICKSTART: brew tap Open-MBEE/tap first, direct download + xattr fallback

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

---------

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…reference

* fix(parser,passes): satisfy references a requirement usage, not a type

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(passes): resolve aliases for satisfy reference targets

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

---------

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…notation

* feat(parser): add textual notation for history, entry/exit points and deferred events

Declare history (shallow/deep), entry/exit point pseudostates and event
deferral in a state body, lowered onto the existing runtime support.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(lower): report a defer written in a region body instead of dropping it

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

---------

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…ones and drop provisional reference caching

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…ition

The invocation checker matched a declaration with no ':>>' target to an
inherited parameter of the same name before falling back to position, which
disagrees with the positional rule in semantics/redefinition.go (KerML 7.4.7.2)
whenever a specialization reorders the names it redeclares.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
… declaration

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
devin-ai-integration Bot and others added 11 commits August 7, 2026 00:41
The invocation checker positioned a redeclared parameter within the declared
'in' parameters only, so an 'out' declared before an 'in' shifted it relative to
semantics/redefinition.go, which numbers positions over all parameters. Merging
now runs over every directed feature, with the signature restricted to the
inputs afterwards, and a position whose directions disagree is not treated as a
redefinition.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…efines

parametersOf appended the general behavior's parameters beyond the count of
owned ones, which claims the wrong parameter when an owned one redefines a
general parameter at another position explicitly: the redefined parameter was
inherited and the un-redefined one dropped. The inherited tail is now the
parameters no owned parameter claims, by ':>>' target or by position.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…e scope

A perform statement's borrowed effective name was hidden by skipping the
enclosing scope entirely, which also skipped that scope's inherited members
and imports, so performing an action a part inherits from its type reported
an unresolved reference. A refFilter now hides just those bindings during the
lookup, with Model.LookupContributedMember supplying the inherited half.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
mergeParameters replaced inherited entries in place, keeping the general
behavior's order, while semantics.Model.parametersOf puts the declared
parameters first and appends what none of them redefines (KerML 7.4.7.2). The
two orders diverged as soon as a ':>>' named a parameter at another position, so
a model could be typed against one parameter and argument-checked against
another. The list is now built declared-first, with the same claiming rule.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
The editor looked up the last segment of `perform a.b;` in the enclosing
scope, where the perform statement itself is now bound under that borrowed
name, so definition/references/rename pointed at the perform statement.
resolve.Reference carries the chain, so the segment resolves as a member of
the operand as the document walk does. The chain member's span was also the
empty span after it, which hid the segment from the editor entirely.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…nce-subsetting

* feat(semantics): resolve members contributed by reference subsetting

A `perform` action usage relates the action it performs by a reference
subsetting (SysML 7.17.6, KerML 8.3.3.3.9), so the referenced action's
members are visible on the performing usage. Model that as a distinct
member-contribution relation (`Model.ReferencedFeature` /
`Model.MemberSources`) consumed by member lookup, deliberately outside
`DirectSupertypes` so conformance and implicit typing are unaffected.

An unnamed usage takes the effective name of the feature it references,
and that name is bound in the scope the reference itself resolves in, so
reference targets resolve outside their own binding
(`resolve.Resolver.ReferenceScope`).

Also distinguishes the `via`, `about` and `by` clauses, which named
related elements through the same relationship kind without being
subsettings, and parses `allocate a to b` as an anonymous binary
allocation.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(lsp): resolve perform references outside the perform statement's own name

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(runtime,lower): run the action a bare perform statement names

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(resolve,symbols,semantics): prefer declared names over effective ones and drop provisional reference caching

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(resolve,symbols): let effective names never shadow or ambiguate a declaration

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(resolve): hide only a reference's own borrowed name, not its whole scope

A perform statement's borrowed effective name was hidden by skipping the
enclosing scope entirely, which also skipped that scope's inherited members
and imports, so performing an action a part inherits from its type reported
an unresolved reference. A refFilter now hides just those bindings during the
lookup, with Model.LookupContributedMember supplying the inherited half.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(lsp,parser): resolve a feature chain's member through its operand

The editor looked up the last segment of `perform a.b;` in the enclosing
scope, where the perform statement itself is now bound under that borrowed
name, so definition/references/rename pointed at the perform statement.
resolve.Reference carries the chain, so the segment resolves as a member of
the operand as the document walk does. The chain member's span was also the
empty span after it, which hid the segment from the editor entirely.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

---------

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
mergeParameters advanced a cursor past an explicitly claimed index, so a
following declaration was paired with the next unclaimed inherited parameter
instead of the one at its own position, leaving an extra entry in the list.
semantics.claimedParameters uses the declaration index; both now do.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…ot redefine

A position whose directions disagree is not a redefinition, but it still
counted as a positional claim, so the general behavior's parameter there was
dropped from the effective list: it was neither redefined nor inherited, and a
specialization that only added an output lost one of its inherited inputs.
Claiming now requires the directions to match, in both tiers.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…ining parameter

An implicit parameter redefinition counted as a declared generalization, so it
suppressed the standard library base of the parameter's kind. A parameter
redefining an untyped general parameter therefore lost Items::Item and the
members reachable through it. The two rules are independent: the base is now
applied whenever the declaration itself specializes nothing.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>
…eter-redefinition

* feat(semantics): implicit redefinition of behavior and step parameters

A parameter of a behavior or step implicitly redefines the parameter at the
same position of each behavior or step its owner specializes (KerML 7.4.7.2,
7.4.7.3; SysML v2 7.17.2), and a result parameter redefines the general
calculation's result whatever its position (SysML v2 7.19.2). Redefinition is a
generalization, so the parameter takes the redefined parameter's type when it
declares none: 'out item image;' in 'action focus : Focus' is now typed by
'Image' and 'focus.image.isWellFocused' resolves.

Replaces the name-based rule in implicitBase, which left any usage shadowing a
like-named inherited feature untyped; the specification has no such rule, and a
like-named nested usage is a name conflict, so it now takes the standard
library base of its kind like any other untyped usage.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(passes): match a redeclared parameter to the inherited one by position

The invocation checker matched a declaration with no ':>>' target to an
inherited parameter of the same name before falling back to position, which
disagrees with the positional rule in semantics/redefinition.go (KerML 7.4.7.2)
whenever a specialization reorders the names it redeclares.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(passes): number parameter positions over every directed feature

The invocation checker positioned a redeclared parameter within the declared
'in' parameters only, so an 'out' declared before an 'in' shifted it relative to
semantics/redefinition.go, which numbers positions over all parameters. Merging
now runs over every directed feature, with the signature restricted to the
inputs afterwards, and a position whose directions disagree is not treated as a
redefinition.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(semantics): inherit the general parameters no owned parameter redefines

parametersOf appended the general behavior's parameters beyond the count of
owned ones, which claims the wrong parameter when an owned one redefines a
general parameter at another position explicitly: the redefined parameter was
inherited and the un-redefined one dropped. The inherited tail is now the
parameters no owned parameter claims, by ':>>' target or by position.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(passes): order the parameter list as the semantic model does

mergeParameters replaced inherited entries in place, keeping the general
behavior's order, while semantics.Model.parametersOf puts the declared
parameters first and appends what none of them redefines (KerML 7.4.7.2). The
two orders diverged as soon as a ':>>' named a parameter at another position, so
a model could be typed against one parameter and argument-checked against
another. The list is now built declared-first, with the same claiming rule.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(passes): claim the inherited parameter at the declaration's position

mergeParameters advanced a cursor past an explicitly claimed index, so a
following declaration was paired with the next unclaimed inherited parameter
instead of the one at its own position, leaving an extra entry in the list.
semantics.claimedParameters uses the declaration index; both now do.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(semantics,passes): keep an inherited parameter a declaration cannot redefine

A position whose directions disagree is not a redefinition, but it still
counted as a positional claim, so the general behavior's parameter there was
dropped from the effective list: it was neither redefined nor inherited, and a
specialization that only added an output lost one of its inherited inputs.
Claiming now requires the directions to match, in both tiers.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

* fix(semantics): keep the standard library base of an implicitly redefining parameter

An implicit parameter redefinition counted as a declared generalization, so it
suppressed the standard library base of the parameter's kind. A parameter
redefining an untyped general parameter therefore lost Items::Item and the
members reachable through it. The two rules are independent: the base is now
applied whenever the declaration itself specializes nothing.

Co-Authored-By: jason.han <jason.han@jpl.nasa.gov>

---------

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
@HuiJun
HuiJun merged commit 343e3ee into Open-MBEE:main Aug 7, 2026
1 check passed
HuiJun added a commit that referenced this pull request Aug 11, 2026
F2: the reported parse-time loss of all but the first end does not reproduce for a named connection; add regression coverage at every layer and record the anonymous inline form's binary-only limitation.

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: jason.han <jason.han@jpl.nasa.gov>
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