[bug] E4-4: Graceful shutdown incomplete — jsonlWatcher, PipelineManager, MemoryBridge not stopped

[OneStepAt4time]

Finding

ID: S-1–S-4 | Severity: 🟠 MEDIUM

jsonlWatcher, PipelineManager, and MemoryBridge.stopReaper() are never called during gracefulShutdown(). SwarmMonitor's in-flight scans are not awaited.

Fix Required

1. Call jsonlWatcher.close() in gracefulShutdown()
2. Call pipelines.destroy() in gracefulShutdown()
3. Call memoryBridge.stopReaper() in gracefulShutdown()
4. SwarmMonitor.stop(): await in-flight scans with a 2-second timeout before force-stop

Files: src/server.ts

Acceptance Criteria

SIGTERM completes without open file handle warnings.

Milestone

M-E4: Reliability & Robustness

[OneStepAt4time]

🔧 Subagent implementation attempt:

Subagent claimed to complete this issue with changes to src/server.ts (stopSwarmMonitorWithTimeout helper, cleanup calls in gracefulShutdown()). However, changes were not persisted to git - no branch created, no commits.

Blocker: AEGIS sessions return INVALID_WORKDIR for all paths tried:

• /home/buntu/aegis
• /home/buntu/projects/aegis

This is blocking my ability to use AEGIS for development. Need team guidance on correct workdir path or alternative implementation approach.