Create and store MD5 hashes of Illumina .fastq.gz files from sequencing runs
MiSeqHashR is available as a pip package:
pip install MiSeqHashR
MiSeqHashR requires a single command line argument: the path to an Illumina MiSeq run
MiSeqHashR -f sequences/200101_M05722
usage: MiSeqHashR [-h] -f folder [-v VERBOSITY] [--version]
Create MD5 hashes for all FASTQ files in a MiSeq run
optional arguments:
-h, --help show this help message and exit
-f folder, --folder folder
Name and path of sequencing folder.
-v VERBOSITY, --verbosity VERBOSITY
Set the logging level. Options are debug, info, warning, error, and critical. Default is info.
--version, --version show program's version number and exit