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@OLC-Bioinformatics

OLC-Bioinformatics

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  1. ConFindr ConFindr Public

    Intra-species bacterial contamination detection

    Python 22 8

  2. COWBAT COWBAT Public

    CFIA OLC Workflow for Bacterial Assembly and Typing

    Python 4 5

  3. olc_genomics_portal olc_genomics_portal Public

    Source for OLC's Genomics Portal

    JavaScript 3 1

  4. geneSippr geneSippr Public

    Perl 2 1

  5. GeneSeekr GeneSeekr Public

    Forked from adamkoziol/pythonGeneSeekr

    Quick parallel BLAST for gene finding

    Python 2

  6. OLCTools OLCTools Public

    Python package for commonly used tools at OLC.

    Python 2 3

Repositories

Showing 10 of 34 repositories
  • Poresippr_db Public

    This repository contains curated virulence stx genes from Ecoli genomes

    OLC-Bioinformatics/Poresippr_db’s past year of commit activity
    0 0 0 0 Updated Oct 25, 2024
  • OLCTools Public

    Python package for commonly used tools at OLC.

    OLC-Bioinformatics/OLCTools’s past year of commit activity
    Python 2 MIT 3 2 0 Updated Oct 11, 2024
  • COWBAT Public

    CFIA OLC Workflow for Bacterial Assembly and Typing

    OLC-Bioinformatics/COWBAT’s past year of commit activity
    Python 4 MIT 5 1 0 Updated Oct 11, 2024
  • BaitCapture Public

    A Nextflow workflow for processing data obtained from targeted resistome bait-capture sequencing

    OLC-Bioinformatics/BaitCapture’s past year of commit activity
    Nextflow 1 MIT 0 1 0 Updated Sep 13, 2024
  • redmine-docs Public

    User documentation for OLC Redmine instance

    OLC-Bioinformatics/redmine-docs’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 15, 2024
  • PoreSippR-GUI Public

    GUI for PoreSippR

    OLC-Bioinformatics/PoreSippR-GUI’s past year of commit activity
    Python 0 0 0 0 Updated Aug 7, 2024
  • kma_geneseekr_parser Public

    This parser is used to compare kma and geneseekr output of two colums seqid and stx genes and user have to provide mapping file

    OLC-Bioinformatics/kma_geneseekr_parser’s past year of commit activity
    Python 0 0 0 0 Updated Jul 29, 2024
  • Poresippr_code Public

    Poresippr python code for analysing the stx genes

    OLC-Bioinformatics/Poresippr_code’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 25, 2024
  • AlleleFinder Public

    A suite of tools, written in Python, designed for the discovery, sequence typing, and profiling the stx alleles in Shiga toxin-producing E. coli

    OLC-Bioinformatics/AlleleFinder’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Jul 15, 2024
  • olc_genomics_portal Public

    Source for OLC's Genomics Portal

    OLC-Bioinformatics/olc_genomics_portal’s past year of commit activity
    JavaScript 3 1 13 16 Updated May 22, 2024
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