Search results

Adding the contam_ prefix doesn't work with an existing database. It only works when downloading the database using Philosopher

Status: Open.

#528 In Nesvilab/philosopher;

· hupak2022 opened on Apr 1, 2025

error: Cannot deploy asset. InteractParser.

Status: Open.

#527 In Nesvilab/philosopher;

· yashacode opened on Mar 28, 2025

Fragpipe protein prophet crash

Status: Open.

#524 In Nesvilab/philosopher;

· NikolaMonteverde opened on Mar 17, 2025

Inflation in peptide IDs after group specific FDR

Status: Open.

#522 In Nesvilab/philosopher;

· mkirankumar45 opened on Feb 10, 2025

combined_protein.tsv with empty sample columns

Status: Open.

#520 In Nesvilab/philosopher;

· loganjohnson0 opened on Jan 25, 2025

Non-zero exit code MS Fragger

Status: Open.

#519 In Nesvilab/philosopher;

· talithar-star opened on Jan 9, 2025

Incorrect Extended Peptide in `psm.tsv

Status: Open.

#518 In Nesvilab/philosopher;

· fcyu opened on Dec 19, 2024

Adding the contam_ prefix doesn't work with an existing database. It only works when downloading the database using Philosopher

Status: Open.

#516 In Nesvilab/philosopher;

· lxneves opened on Dec 13, 2024

Database - cannot download redundant proteomes or in-house - java.lang error

Status: Open.

#514 In Nesvilab/philosopher;

· Althalis opened on Nov 30, 2024

No peptides and spectral but identified as a protein

Status: Open.

#513 In Nesvilab/philosopher;

· LiTing99-cutie opened on Nov 22, 2024

panic: the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter

Status: Open.

#511 In Nesvilab/philosopher;

· FloorWur opened on Nov 20, 2024

PProcess 'PhilosopherFilter' finished, exit code: 2 Process returned non-zero exit code, stopping

Status: Open.

#507 In Nesvilab/philosopher;

· baynec2 opened on Oct 25, 2024