Code used in Hebert et al., submitted to Ecosphere
Recommended order to run the .R files:
Survey Data Preprocessing.RCovariate VIFs and Correlations.REnvironmental Raster Processing for Prediction.Rmgcv Model Fitting + Output.Rstarve Model Fitting + Output.RsdmTMB Model Fitting + Output.RFigures 1, 2, 3, and 5 + Figure S2.R
The three model fitting scripts listed above each depend on the processed survey data from Survey Data Preprocessing.R and the processed environmental raster data from Environmental Raster Processing for Prediction.R. Most of Figures 1, 2, 3, and 5 + Figure S2.R depends on the three fitted models.