SplitsTree App

A syntax-highlighting pager for git, diff, grep, and blame output

My personal dotfiles

A GPU-accelerated cross-platform terminal emulator and multiplexer written by @wez and implemented in Rust

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

Tiberius is a deep learning gene finder.

Match up paired end fastq files quickly and efficiently.

The easiest library for creating GUIs in Python

Fast analysis and visualization of latent clusters in population genetic data

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

Randomly subsample sequencing reads or alignments

source code for EVM

Genome annotation with AUGUSTUS

Gzip Decompression and Random Access for Modern Multi-Core Machines

BWT construction and search

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

TSEBRA: Transcript Selector for BRAKER

Genome browser and variant annotation

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

jq, but with many interoperable configuration format transcodings and interactive querying.

SMC++ infers population history from whole-genome sequence data.

Using Deep Learning to predict gene annotations

A conda-forge distribution.

Open-source usearch

Software for painlessly estimating average nucleotide diversity within and between populations

Convert markdown to html in Zenn format

Shiny server configuration with Nginx load balancer

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

TEtrimmer: a novel tool to automate manual curation of transposable elements