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9 stars written in C
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BWK awk modified for biological data

C 602 119 Updated Aug 11, 2022

A complete pipeline for metagenomic analysis

C 393 81 Updated Feb 12, 2025

Simple oligo analysis and primer design

C 173 44 Updated Feb 17, 2025

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

C 162 60 Updated Nov 21, 2022

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

C 160 12 Updated Jan 5, 2025

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

C 157 19 Updated Dec 1, 2023

Match up paired end fastq files quickly and efficiently.

C 144 32 Updated Jun 2, 2024

BWT construction and search

C 110 3 Updated Feb 16, 2025

EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP

C 38 9 Updated Jan 22, 2025
9 stars written in C