Merge commit '12a4dc60e2e84e9fae886a49ee761c8b4638098e' into csd-sto-…

…sfcpert

.travis.yml

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+# This will run on Travis' 'new' container-based infrastructure
+sudo: false 
+
+before_install:
+    - wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
+    - chmod +x miniconda.sh
+    - "./miniconda.sh -b"
+    - export PATH=/home/travis/miniconda2/bin:$PATH
+    - conda update --yes conda
+
+install:
+    - conda install --yes sphinx
+    - pip install sphinx_rtd_theme
+
+# Blacklist
+branches:
+  only:
+    - ufs_public_release
+    - release/public-v1
+
+# Environment variables
+env:
+  global:
+    - GH_REPO_NAME: stochastic_physics
+    - DOXYFILE: $TRAVIS_BUILD_DIR/
+    - GH_REPO_REF: github.com/noaa-psd/stochastic_physics.git
+
+# Install dependencies
+addons:
+  apt:
+    packages:
+      - doxygen
+      - graphviz
+
+# Build your code e.g. by calling make
+script:
+    - doxygen
+    - pushd docs
+#   Use Sphinx to make the html docs
+    - make html
+#   Tell GitHub not to use jekyll to compile the docs
+    - touch build/html/.nojekyll
+    - popd
+
+# Generate and deploy documentation
+before_deploy:
+    - cp -r html docs/build/html/doxygen
+deploy:
+  provider: pages
+  skip_cleanup: true
+  local_dir: docs/build/html
+  github_token: $GH_REPO_TOKEN
+  on:
+    branch: 
+       - ufs_public_release
+       - release/public-v1

Doxyfile

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+PROJECT_NAME           = "stochastic physics"
+PROJECT_NUMBER         = v1
+STRIP_FROM_PATH        = 
+INPUT                  = 
+FILE_PATTERNS          = *.md  \
+                         *.h   \
+                         *.doc \
+                         *.c   \
+                         *.f   \
+                         *.F90
+RECURSIVE              = YES
+USE_MDFILE_AS_MAINPAGE = README.md
+OPTIMIZE_FOR_FORTRAN   = YES
+GENERATE_XML           = NO  
+INLINE_SIMPLE_STRUCTS  = YES
+EXTRACT_ALL            = YES
+HAVE_DOT               = YES
+CALL_GRAPH             = YES
+CALLER_GRAPH           = YES
+PROJECT_LOGO           = docs/UFS_logo.png
+DISABLE_INDEX          = YES
+GENERATE_TREEVIEW      = YES

LICENSE.md

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+Copyright 2020 The Regents of the University of Colorado
+
+The stochastic_physics code incorporated in the Unified Forecast System (UFS) 
+was jointly developed by the National Oceanic and Atmospheric Administration and the 
+University of Colorado, Boulder. The gold standard copy of the Code 
+will be maintained by NOAA at https://github.com/noaa-psd/stochastic_physics.
+
+In cooperation with the Copyright Holder, the National Oceanic and 
+Atmospheric Administration is releasing this code under the 
+GNU Lesser General PUblic License v3.0 (the "License"); you may not use this 
+file except in compliance with the License. 
+
+You may obtain a copy of the License at
+
+    https://www.gnu.org/licenses/lgpl-3.0.en.html
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License