Integration test fixes

NOAA-OWP · Mar 28, 2023 · 53f8f41 · 53f8f41
1 parent 1ee60d0
commit 53f8f41
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Showing 11 changed files with 2,271 additions and 250 deletions.
diff --git a/.github/workflows/module_integration.yml b/.github/workflows/module_integration.yml
@@ -145,17 +145,20 @@ jobs:
           pip install -U pip
           pip install -U setuptools
           pip install -r requirements.txt
-          pip install deprecated pyarrow pytables
+          pip install deprecated pyarrow tables geopandas
           if [ ${{ runner.os }} == 'macOS' ] 
           then
             export LIBRARY_PATH=/usr/local/lib/gcc/11/
             export LD_LIBRARY_PATH=/usr/local/lib/gcc/11/
           fi
-          FC=gfortran F90=gfortran ./compiler.sh
+          sed -i.bak 's/NETCDF}"/NETCDF}\/include"/' compiler.sh
+          export FC=gfortran
+          export F90=gfortran 
+          ./compiler.sh
           cd src
           pip install troute-nwm/
-          pip install troute-network/
-          pip install troute-routing/
+          pip install --install-option="--use-cython" troute-network/
+          pip install --install-option="--use-cython" troute-routing/
           
           deactivate
 

diff --git a/test/data/routing/.gitignore b/test/data/routing/.gitignore
@@ -0,0 +1,2 @@
+*.parquet
+*.nc
diff --git a/test/data/routing/flowpath_edge_list.json b/test/data/routing/flowpath_edge_list.json
diff --git a/test/data/routing/gauge_01073000.gpkg b/test/data/routing/gauge_01073000.gpkg