Modify workflow to access files from obs component #1202
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| Original file line number | Diff line number | Diff line change |
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@@ -34,8 +34,8 @@ if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then | |
| export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}} | ||
| export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}} | ||
| else | ||
| export COMIN_OBS="${COMIN_OBS:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/obs}" | ||
| export COMIN_GES_OBS="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/obs" | ||
| fi | ||
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| # COMIN_GES, COMIN_ANL COMIN_GES_ENS, and COMOUT are used in script | ||
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@@ -55,23 +55,14 @@ fi | |
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| # Link observational data | ||
| export PREPQC="${COMIN_OBS}/${OPREFIX}prepbufr" | ||
| if [[ ! -f ${PREPQC} ]]; then | ||
| echo "WARNING: Global PREPBUFR FILE ${PREPQC} MISSING" | ||
| fi | ||
| export TCVITL="${COMIN_ANL}/${OPREFIX}syndata.tcvitals.tm00" | ||
| if [[ ${DONST} = "YES" ]]; then | ||
| export NSSTBF="${COMIN_OBS}/${OPREFIX}nsstbufr" | ||
| fi | ||
| export PREPQCPF="${COMIN_OBS}/${OPREFIX}prepbufr.acft_profiles" | ||
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| # Guess Bias correction coefficients related to control | ||
| export GBIAS=${COMIN_GES_CTL}/${GPREFIX}abias | ||
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@@ -123,7 +114,7 @@ status=$? | |
| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]] ; then | ||
| cat ${pgmout} | ||
| fi | ||
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| Original file line number | Diff line number | Diff line change | ||||
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@@ -25,7 +25,7 @@ export CASE=${CASE_ENKF} | |||||
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| EUPD_CYC=$(echo ${EUPD_CYC:-"gdas"} | tr a-z A-Z) | ||||||
| if [[ ${EUPD_CYC} = "GFS" ]]; then | ||||||
| CDUMP_ENKF="gfs" | ||||||
| else | ||||||
| CDUMP_ENKF=${CDUMP} | ||||||
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@@ -40,8 +40,8 @@ if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then | |||||
| export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos} | ||||||
| export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos} | ||||||
| else | ||||||
| export COMIN_OBS="${COMIN_OBS:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/obs}" | ||||||
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| export COMIN_GES_OBS="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/obs" | ||||||
| fi | ||||||
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| # COMIN, COMIN_ENS and COMIN_GES_ENS are used in script | ||||||
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@@ -66,7 +66,7 @@ status=$? | |||||
| ############################################## | ||||||
| # Final processing | ||||||
| ############################################## | ||||||
| if [[ -e "${pgmout}" ]] ; then | ||||||
| cat ${pgmout} | ||||||
| fi | ||||||
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| Original file line number | Diff line number | Diff line change | ||||
|---|---|---|---|---|---|---|
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@@ -35,8 +35,8 @@ if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then | |||||
| export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}} | ||||||
| export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}} | ||||||
| else | ||||||
| export COMIN_OBS="${COMIN_OBS:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/obs}" | ||||||
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| export COMIN_GES_OBS="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/obs" | ||||||
| fi | ||||||
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| # COMIN_GES, COMIN_ANL COMIN_GES_ENS, and COMOUT are used in script | ||||||
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@@ -48,7 +48,7 @@ export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}" | |||||
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| export ATMGES_ENSMEAN="${COMIN_GES_ENS}/${GPREFIX}atmf006${GSUFFIX}" | ||||||
| if [[ ! -f ${ATMGES_ENSMEAN} ]]; then | ||||||
| echo "FATAL ERROR: FILE MISSING: ATMGES_ENSMEAN = ${ATMGES_ENSMEAN}" | ||||||
| exit 1 | ||||||
| fi | ||||||
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@@ -59,23 +59,14 @@ status=$? | |||||
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| # Link observational data | ||||||
| export PREPQC="${COMIN_OBS}/${OPREFIX}prepbufr" | ||||||
| if [[ ! -f ${PREPQC} ]]; then | ||||||
| echo "WARNING: Global PREPBUFR FILE ${PREPQC} MISSING" | ||||||
| fi | ||||||
| export TCVITL="${COMIN_ANL}/${OPREFIX}syndata.tcvitals.tm00" | ||||||
| if [[ ${DONST} = "YES" ]]; then | ||||||
| export NSSTBF="${COMIN_OBS}/${OPREFIX}nsstbufr" | ||||||
| fi | ||||||
| export PREPQCPF="${COMIN_OBS}/${OPREFIX}prepbufr.acft_profiles" | ||||||
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| # Guess Bias correction coefficients related to control | ||||||
| export GBIAS=${COMIN_GES_CTL}/${GPREFIX}abias | ||||||
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@@ -122,7 +113,7 @@ status=$? | |||||
| ############################################## | ||||||
| # Send Alerts | ||||||
| ############################################## | ||||||
| if [[ ${SENDDBN} = YES ]] ; then | ||||||
| ${DBNROOT}/bin/dbn_alert MODEL ENKF1_MSC_gsistat ${job} ${GSISTAT} | ||||||
| fi | ||||||
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@@ -134,7 +125,7 @@ fi | |||||
| ############################################## | ||||||
| # Final processing | ||||||
| ############################################## | ||||||
| if [[ -e "${pgmout}" ]] ; then | ||||||
| cat ${pgmout} | ||||||
| fi | ||||||
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| Original file line number | Diff line number | Diff line change | ||||
|---|---|---|---|---|---|---|
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@@ -25,7 +25,7 @@ export CASE=${CASE_ENKF} | |||||
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| EUPD_CYC=$(echo ${EUPD_CYC:-"gdas"} | tr a-z A-Z) | ||||||
| if [[ ${EUPD_CYC} = "GFS" ]]; then | ||||||
| CDUMP_ENKF="gfs" | ||||||
| else | ||||||
| CDUMP_ENKF=${CDUMP} | ||||||
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@@ -40,8 +40,8 @@ if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then | |||||
| export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos} | ||||||
| export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos} | ||||||
| else | ||||||
| export COMIN_OBS="${COMIN_OBS:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/obs}" | ||||||
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| export COMIN_GES_OBS="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/obs" | ||||||
| fi | ||||||
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| # COMIN, COMIN_ENS and COMIN_GES_ENS are used in script | ||||||
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@@ -67,7 +67,7 @@ status=$? | |||||
| ############################################## | ||||||
| # Final processing | ||||||
| ############################################## | ||||||
| if [[ -e "${pgmout}" ]] ; then | ||||||
| cat ${pgmout} | ||||||
| fi | ||||||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -28,17 +28,15 @@ export OPREFIX="${CDUMP}.t${cyc}z." | |
| export GPREFIX="${GDUMP}.t${gcyc}z." | ||
| export APREFIX="${CDUMP}.t${cyc}z." | ||
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| export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos} | ||
| export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos} | ||
| export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos} | ||
| if [ ${RUN_ENVIR} = "nco" ]; then | ||
| export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos} | ||
| else | ||
| export COMIN_GES_OBS="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/obs" | ||
| fi | ||
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| mkdir -m 775 -p ${COMOUT} | ||
| # COMIN_GES and COMIN_GES_ENS are used in script | ||
| export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos" | ||
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@@ -69,26 +67,19 @@ fi | |
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| # Link observational data | ||
| export PREPQC="${COMIN_OBS}/${OPREFIX}prepbufr" | ||
| if [[ ! -f ${PREPQC} ]]; then | ||
| echo "WARNING: Global PREPBUFR FILE ${PREPQC} MISSING" | ||
| fi | ||
| export TCVITL="${COMOUT}/${OPREFIX}syndata.tcvitals.tm00" | ||
| if [[ ${DONST} = "YES" ]]; then | ||
| if [[ ${MAKE_NSSTBUFR} == "YES" ]]; then | ||
| export NSSTBF="${COMIN_OBS}/${OPREFIX}nsstbufr" | ||
| fi | ||
| fi | ||
| export PREPQCPF="${COMIN_OBS}/${OPREFIX}prepbufr.acft_profiles" | ||
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| # Copy fix file for obsproc # TODO: Why is this necessary? | ||
| if [[ ${RUN} = "gfs" ]]; then | ||
| mkdir -p ${ROTDIR}/fix | ||
| cp ${FIXgsi}/prepobs_errtable.global ${ROTDIR}/fix/ | ||
| fi | ||
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@@ -119,7 +110,7 @@ fi | |
| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]] ; then | ||
| cat ${pgmout} | ||
| fi | ||
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| Original file line number | Diff line number | Diff line change | ||||
|---|---|---|---|---|---|---|
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@@ -33,8 +33,8 @@ if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then | |||||
| export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos} | ||||||
| else | ||||||
| export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos" | ||||||
| export COMIN_OBS="${COMIN_OBS:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/obs}" | ||||||
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| export COMIN_GES_OBS="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/obs" | ||||||
| fi | ||||||
| mkdir -m 775 -p ${COMOUT} | ||||||
| # COMIN_GES and COMIN_GES_ENS are used in script | ||||||
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@@ -83,7 +83,7 @@ status=$? | |||||
| ############################################## | ||||||
| # Final processing | ||||||
| ############################################## | ||||||
| if [[ -e "${pgmout}" ]] ; then | ||||||
| cat ${pgmout} | ||||||
| fi | ||||||
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| Original file line number | Diff line number | Diff line change | ||||
|---|---|---|---|---|---|---|
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@@ -10,7 +10,7 @@ source "${HOMEgfs}/ush/jjob_header.sh" -e "sfcanl" -c "base sfcanl" | |||||
| export CDATE=${CDATE:-${PDY}${cyc}} | ||||||
| export CDUMP=${CDUMP:-${RUN:-"gfs"}} | ||||||
| export COMPONENT="atmos" | ||||||
| if [[ ${RUN_ENVIR} = "nco" ]]; then | ||||||
| export ROTDIR=${COMROOT:?}/${NET}/${envir} | ||||||
| fi | ||||||
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@@ -35,8 +35,8 @@ if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then | |||||
| export COMIN_GES_OBS=${COMIN_GES_OBS:-${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos} | ||||||
| else | ||||||
| export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos" | ||||||
| export COMIN_OBS="${COMIN_OBS:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/obs}" | ||||||
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Suggested change
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| export COMIN_GES_OBS="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/obs" | ||||||
| fi | ||||||
| mkdir -m 775 -p ${COMOUT} | ||||||
| # COMIN_GES and COMIN_GES_ENS are used in script | ||||||
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@@ -66,7 +66,7 @@ status=$? | |||||
| ############################################## | ||||||
| # Final processing | ||||||
| ############################################## | ||||||
| if [[ -e "${pgmout}" ]] ; then | ||||||
| cat ${pgmout} | ||||||
| fi | ||||||
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ROTDIR_DUMP=NOdoes not work, so this change is untested.