Add in initial 3DVar aerosol DA cycling capability #1106
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,62 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| source "${HOMEgfs}/ush/preamble.sh" | ||
| export WIPE_DATA="NO" | ||
| export DATA=${DATA:-${DATAROOT}/${RUN}aeroanl_${cyc}} | ||
| source "${HOMEgfs}/ush/jjob_header.sh" -e "aeroanlfinal" -c "base aeroanl aeroanlfinal" | ||
|
|
||
| ############################################## | ||
| # Set variables used in the script | ||
| ############################################## | ||
| export CDATE=${CDATE:-${PDY}${cyc}} | ||
| export CDUMP=${CDUMP:-${RUN:-"gfs"}} | ||
|
|
||
|
|
||
| ############################################## | ||
| # Begin JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| GDATE=$(date +%Y%m%d%H -d "${CDATE:0:8} ${CDATE:8:2} - ${assim_freq} hours") | ||
| export GDATE | ||
| gPDY=${GDATE:0:8} | ||
| export gcyc=${GDATE:8:2} | ||
| export GDUMP=${GDUMP:-"gdas"} | ||
|
|
||
| export OPREFIX="${CDUMP}.t${cyc}z." | ||
| export GPREFIX="${GDUMP}.t${gcyc}z." | ||
| export APREFIX="${CDUMP}.t${cyc}z." | ||
|
|
||
| export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/chem} | ||
|
|
||
| mkdir -p "${COMOUT}" | ||
|
|
||
| # COMIN_GES and COMIN_GES_ENS are used in script | ||
| export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/chem" | ||
| export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/chem" | ||
|
|
||
| ############################################################### | ||
| # Run relevant script | ||
|
|
||
| EXSCRIPT=${GDASAEROFINALPY:-${HOMEgfs}/scripts/exglobal_aero_analysis_finalize.py} | ||
| ${EXSCRIPT} | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
|
|
||
| ############################################## | ||
| # End JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]] ; then | ||
| cat "${pgmout}" | ||
| fi | ||
|
|
||
| ########################################## | ||
| # Remove the Temporary working directory | ||
| ########################################## | ||
| cd "${DATAROOT}" || exit 1 | ||
| [[ ${KEEPDATA} = "NO" ]] && rm -rf "${DATA}" | ||
|
|
||
| exit 0 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| source "${HOMEgfs}/ush/preamble.sh" | ||
| export DATA=${DATA:-${DATAROOT}/${RUN}aeroanl_${cyc}} | ||
| source "${HOMEgfs}/ush/jjob_header.sh" -e "aeroanlinit" -c "base aeroanl aeroanlinit" | ||
|
|
||
| ############################################## | ||
| # Set variables used in the script | ||
| ############################################## | ||
| export CDATE=${CDATE:-${PDY}${cyc}} | ||
| export CDUMP=${CDUMP:-${RUN:-"gfs"}} | ||
|
|
||
|
|
||
| ############################################## | ||
| # Begin JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| GDATE=$(date +%Y%m%d%H -d "${CDATE:0:8} ${CDATE:8:2} - ${assim_freq} hours") | ||
| export GDATE | ||
| gPDY=${GDATE:0:8} | ||
| export gcyc=${GDATE:8:2} | ||
| export GDUMP=${GDUMP:-"gdas"} | ||
|
|
||
| export OPREFIX="${CDUMP}.t${cyc}z." | ||
| export GPREFIX="${GDUMP}.t${gcyc}z." | ||
| export APREFIX="${CDUMP}.t${cyc}z." | ||
|
|
||
| export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/chem} | ||
|
|
||
| mkdir -p "${COMOUT}" | ||
|
|
||
| # COMIN_GES and COMIN_GES_ENS are used in script | ||
| export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/chem" | ||
| export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/chem" | ||
|
|
||
| ############################################################### | ||
| # Run relevant script | ||
|
|
||
| EXSCRIPT=${GDASAEROINITPY:-${HOMEgfs}/scripts/exglobal_aero_analysis_initialize.py} | ||
| ${EXSCRIPT} | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
|
|
||
| ############################################## | ||
| # End JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]] ; then | ||
| cat "${pgmout}" | ||
| fi | ||
|
|
||
| exit 0 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| source "${HOMEgfs}/ush/preamble.sh" | ||
| export WIPE_DATA="NO" | ||
| export DATA=${DATA:-${DATAROOT}/${RUN}aeroanl_${cyc}} | ||
| source "${HOMEgfs}/ush/jjob_header.sh" -e "aeroanlrun" -c "base aeroanl aeroanlrun" | ||
|
|
||
| ############################################## | ||
| # Set variables used in the script | ||
| ############################################## | ||
| export CDATE=${CDATE:-${PDY}${cyc}} | ||
| export CDUMP=${CDUMP:-${RUN:-"gfs"}} | ||
|
|
||
|
|
||
| ############################################## | ||
| # Begin JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| GDATE=$(date +%Y%m%d%H -d "${CDATE:0:8} ${CDATE:8:2} - ${assim_freq} hours") | ||
| export GDATE | ||
| gPDY=${GDATE:0:8} | ||
| export gcyc=${GDATE:8:2} | ||
| export GDUMP=${GDUMP:-"gdas"} | ||
|
|
||
| export OPREFIX="${CDUMP}.t${cyc}z." | ||
| export GPREFIX="${GDUMP}.t${gcyc}z." | ||
| export APREFIX="${CDUMP}.t${cyc}z." | ||
|
|
||
| export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/chem} | ||
|
|
||
| mkdir -p "${COMOUT}" | ||
|
|
||
| # COMIN_GES and COMIN_GES_ENS are used in script | ||
| export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/chem" | ||
| export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/chem" | ||
|
|
||
| ############################################################### | ||
| # Run relevant script | ||
|
|
||
| EXSCRIPT=${GDASAERORUNSH:-${HOMEgfs}/scripts/exglobal_aero_analysis_run.sh} | ||
| ${EXSCRIPT} | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
|
|
||
| ############################################## | ||
| # End JOB SPECIFIC work | ||
| ############################################## | ||
|
|
||
| ############################################## | ||
| # Final processing | ||
| ############################################## | ||
| if [[ -e "${pgmout}" ]] ; then | ||
| cat "${pgmout}" | ||
| fi | ||
|
|
||
| exit 0 |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,15 +1,23 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| source "${HOMEgfs}/ush/preamble.sh" | ||
|
|
||
| ############################################################### | ||
| # Source UFSDA workflow modules | ||
| . "${HOMEgfs}/ush/load_ufsda_modules.sh" | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
|
|
||
| export job="aeroanlfinal" | ||
| export jobid="${job}.$$" | ||
|
|
||
| ############################################################### | ||
| # setup python path for workflow utilities and tasks | ||
| pygwPATH="${HOMEgfs}/ush/python:${HOMEgfs}/ush/python/pygw/src" | ||
| PYTHONPATH="${PYTHONPATH:+${PYTHONPATH}:}${pygwPATH}" | ||
| export PYTHONPATH | ||
| ############################################################### | ||
| # Execute the JJOB | ||
| "${HOMEgfs}/jobs/JGLOBAL_AERO_ANALYSIS_FINALIZE" | ||
| status=$? | ||
| exit "${status}" | ||
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,15 +1,24 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| source "${HOMEgfs}/ush/preamble.sh" | ||
|
|
||
| ############################################################### | ||
| # Source UFSDA workflow modules | ||
| . "${HOMEgfs}/ush/load_ufsda_modules.sh" | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
|
|
||
| export job="aeroanlinit" | ||
| export jobid="${job}.$$" | ||
|
|
||
| ############################################################### | ||
| # setup python path for workflow utilities and tasks | ||
| pygwPATH="${HOMEgfs}/ush/python:${HOMEgfs}/ush/python/pygw/src" | ||
| PYTHONPATH="${PYTHONPATH:+${PYTHONPATH}:}${pygwPATH}" | ||
| export PYTHONPATH | ||
|
|
||
| ############################################################### | ||
| # Execute the JJOB | ||
| "${HOMEgfs}/jobs/JGLOBAL_AERO_ANALYSIS_INITIALIZE" | ||
| status=$? | ||
| exit "${status}" |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,15 +1,18 @@ | ||
| #! /usr/bin/env bash | ||
|
|
||
| source "${HOMEgfs}/ush/preamble.sh" | ||
|
|
||
| ############################################################### | ||
| # Source UFSDA workflow modules | ||
| . "${HOMEgfs}/ush/load_ufsda_modules.sh" | ||
| status=$? | ||
| [[ ${status} -ne 0 ]] && exit "${status}" | ||
|
|
||
| export job="aeroanlrun" | ||
| export jobid="${job}.$$" | ||
|
|
||
| ############################################################### | ||
| # Execute the JJOB | ||
| "${HOMEgfs}/jobs/JGLOBAL_AERO_ANALYSIS_RUN" | ||
| status=$? | ||
| exit "${status}" |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| mkdir: | ||
| - !ENV ${DATA}/crtm/ | ||
| copy: | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/AerosolCoeff.bin | ||
| - !ENV ${DATA}/crtm/AerosolCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/CloudCoeff.bin | ||
| - !ENV ${DATA}/crtm/CloudCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/v.viirs-m_npp.SpcCoeff.bin | ||
| - !ENV ${DATA}/crtm/v.viirs-m_npp.SpcCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/v.viirs-m_npp.TauCoeff.bin | ||
| - !ENV ${DATA}/crtm/v.viirs-m_npp.TauCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/v.viirs-m_j1.SpcCoeff.bin | ||
| - !ENV ${DATA}/crtm/v.viirs-m_j1.SpcCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/v.viirs-m_j1.TauCoeff.bin | ||
| - !ENV ${DATA}/crtm/v.viirs-m_j1.TauCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/NPOESS.VISice.EmisCoeff.bin | ||
| - !ENV ${DATA}/crtm/NPOESS.VISice.EmisCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/NPOESS.VISland.EmisCoeff.bin | ||
| - !ENV ${DATA}/crtm/NPOESS.VISland.EmisCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/NPOESS.VISsnow.EmisCoeff.bin | ||
| - !ENV ${DATA}/crtm/NPOESS.VISsnow.EmisCoeff.bin | ||
| - - !ENV ${FV3JEDI_FIX}/crtm/${CRTM_VER}/NPOESS.VISwater.EmisCoeff.bin | ||
| - !ENV ${DATA}/crtm/NPOESS.VISwater.EmisCoeff.bin | ||
|
Comment on lines
+4
to
+23
Contributor
There was a problem hiding this comment. Just an FYI
|
||
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,11 @@ | ||
| mkdir: | ||
| - !ENV ${DATA}/fv3jedi | ||
| copy: | ||
| - - !ENV ${FV3JEDI_FIX}/fv3jedi/fv3files/akbk$(npz).nc4 | ||
| - !ENV ${DATA}/fv3jedi/akbk.nc4 | ||
| - - !ENV ${FV3JEDI_FIX}/fv3jedi/fv3files/fmsmpp.nml | ||
| - !ENV ${DATA}/fv3jedi/fmsmpp.nml | ||
| - - !ENV ${FV3JEDI_FIX}/fv3jedi/fv3files/field_table_gfdl | ||
| - !ENV ${DATA}/fv3jedi/field_table | ||
| - - !ENV ${FV3JEDI_FIX}/fv3jedi/fieldmetadata/gfs-aerosol.yaml | ||
| - !ENV ${DATA}/fv3jedi/gfs-restart.yaml |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| ['dust1', 'dust2', 'dust3', 'dust4', 'dust5', 'seas1', 'seas2', 'seas3', 'seas4', 'so4', 'oc1', 'oc2', 'bc1', 'bc2'] |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Uh oh!
There was an error while loading. Please reload this page.