Marine obs reorganization and more ...

[guillaumevernieres]

Things done:

• Assumes that the obs will be organized like something like this from now on:

└── gdas.20180415
    └── 12
        └── ocean
            ├── adt
            │   ├── rads_adt_3a_2018105.nc
            │   └── rads_adt_3b_2018105.nc
            ├── icec
            │   ├── AMSR2-SEAICE-NH_v2r2_GW1_s201804150835180_e201804151014170_c201804151052280.nc
            │   ├── AMSR2-SEAICE-NH_v2r2_GW1_s201804151014190_e201804151150170_c201804151309570.nc
            │   ├── AMSR2-SEAICE-SH_v2r2_GW1_s201804150835180_e201804151014170_c201804151052280.nc
            │   └── AMSR2-SEAICE-SH_v2r2_GW1_s201804151014190_e201804151150170_c201804151309570.nc
            ├── sss
            └── sst
                ├── 20180415095000-STAR-L3U_GHRSST-SSTsubskin-AVHRRF_MB-ACSPO_V2.80-v02.0-fv01.0.nc
                ├── 20180415114000-STAR-L3U_GHRSST-SSTsubskin-AVHRRF_MB-ACSPO_V2.80-v02.0-fv01.0.nc
                └── 20180415132000-STAR-L3U_GHRSST-SSTsubskin-AVHRRF_MB-ACSPO_V2.80-v02.0-fv01.0.nc

• Use of the * wildcard instead of ? to simplify the obs file selection
• Addition of binning for the sst retrieval
• The soca # needs to be more recent.
• This wasn't planned as part of this work, but the bump localization was having issues, so I replaced it with diffusion

Issues addressed

• fixes Regexp to select the marine obs is too restrictive  #869
• fixes Update JEDI #'s #874

[emcbot]

Automated Global-Workflow GDASApp Testing Results:
Machine: orion

Start: Thu Jan 25 12:19:30 CST 2024 on Orion-login-1.HPC.MsState.Edu
---------------------------------------------------
Build:                                  *FAILED*
Build: Failed at Thu Jan 25 12:34:58 CST 2024
Build: see output at /work2/noaa/stmp/cmartin/CI/GDASApp/workflow/PR/876/global-workflow/sorc/log.build

[emcbot]

Automated Global-Workflow GDASApp Testing Results:
Machine: hera

Start: Thu Jan 25 18:31:29 UTC 2024 on hfe07
---------------------------------------------------
Build:                                  *FAILED*
Build: Failed at Thu Jan 25 18:44:35 UTC 2024
Build: see output at /scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp/workflow/PR/876/global-workflow/sorc/log.build

[emcbot]

Automated Global-Workflow GDASApp Testing Results:
Machine: orion

Start: Thu Jan 25 14:45:38 CST 2024 on Orion-login-1.HPC.MsState.Edu
---------------------------------------------------
Build:                                  *FAILED*
Build: Failed at Thu Jan 25 15:14:44 CST 2024
Build: see output at /work2/noaa/stmp/cmartin/CI/GDASApp/workflow/PR/876/global-workflow/sorc/log.build

[emcbot]

Automated Global-Workflow GDASApp Testing Results:
Machine: hera

Start: Thu Jan 25 20:47:19 UTC 2024 on hfe07
---------------------------------------------------
Build:                                  *FAILED*
Build: Failed at Thu Jan 25 21:24:53 UTC 2024
Build: see output at /scratch1/NCEPDEV/da/Cory.R.Martin/CI/GDASApp/workflow/PR/876/global-workflow/sorc/log.build

[emcbot]

Automated Global-Workflow GDASApp Testing Results:
Machine: hera

Start: Fri Jan 26 14:45:32 UTC 2024 on hfe07
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Fri Jan 26 14:59:19 UTC 2024
---------------------------------------------------
Tests:                                 *SUCCESS*
Tests: Completed at Fri Jan 26 15:32:22 UTC 2024
Tests: 100% tests passed, 0 tests failed out of 52

[emcbot]

Automated Global-Workflow GDASApp Testing Results:
Machine: orion

Start: Fri Jan 26 08:45:36 CST 2024 on Orion-login-1.HPC.MsState.Edu
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Fri Jan 26 09:01:29 CST 2024
---------------------------------------------------
Tests:                                 *SUCCESS*
Tests: Completed at Fri Jan 26 09:42:24 CST 2024
Tests: 100% tests passed, 0 tests failed out of 52

[AndrewEichmann-NOAA]

@guillaumevernieres I'm refactoring the obsprep_setup, so don't sweat that too much

[guillaumevernieres]

@RussTreadon-NOAA , @CoryMartin-NOAA , FYI: I added an update to the # commit of the JEDI repositories.

[CoryMartin-NOAA]

Just a question: Is this the assumed structure for DMPDIR, COM_OBS, or both?

[guillaumevernieres]

Just a question: Is this the assumed structure for DMPDIR, COM_OBS, or both?

@CoryMartin-NOAA , what's in the description is the assumed structure of DMPDIR.

[CoryMartin-NOAA]

Thanks, @guillaumevernieres !