Merge pull request #23 from NIEHS/eva_dev #3
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # also derived from https://github.com/we-cli/coverage-badge-action | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: test-coverage-local | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: coverage | |
| - name: Cache C++ and R dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| ~/.cache/R | |
| ~/.local/share/R | |
| key: dependencies-${{ runner.os }}-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| dependencies-${{ runner.os }}- | |
| - name: Test coverage | |
| run: > | |
| Rscript -e | |
| "covd<-covr::coverage_to_list()$totalcoverage; | |
| write.table(covd[length(covd)], file = '${{ github.workspace }}/local_cov.Rout', row.names = F, col.names = F)" | |
| shell: bash | |
| - name: Get Values | |
| id: get-values | |
| shell: bash | |
| run: | | |
| COV=$(cat ${{ github.workspace }}/local_cov.Rout) | |
| echo "Patch coverage read from local_cov.Rout: $COV" | |
| echo "coverage=$COV" >> $GITHUB_OUTPUT | |
| - name: Checkout gh-pages | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: gh-pages | |
| - name: Patch comparison | |
| id: patch-comparison | |
| shell: bash | |
| run: | | |
| cov_patch="${{ steps.get-values.outputs.coverage }}" | |
| cov_current=$(cat cov_current.Rout) | |
| echo "Current coverage: $cov_current" | |
| if (( $(echo "$cov_patch >= $cov_current" | bc -l) )); then | |
| echo "Patch coverage ($cov_patch) is greater than or equal to current coverage ($cov_current)." | |
| echo "cov_update=$cov_patch" >> $GITHUB_OUTPUT | |
| else | |
| echo "Patch coverage ($cov_patch) is less than current coverage ($cov_current)." | |
| exit 1 | |
| fi | |
| - name: Overwrite cov_current.Rout | |
| if: ${{ github.event_name == 'push' }} | |
| shell: bash | |
| run: | | |
| cov_update="${{ steps.patch-comparison.outputs.cov_update }}" | |
| touch cov_current.Rout | |
| echo "$cov_update" > cov_current.Rout | |
| - name: Create Badges | |
| shell: bash | |
| run: | | |
| npm i -g badgen-cli | |
| export COV=${{ steps.get-values.outputs.coverage }} | |
| COLOR=$(node -p '+process.env.COV >= 95 ? `green` : `orange`') | |
| mkdir -p badges | |
| badgen -j coverage -s $COV% -c $COLOR > badges/coverage.svg | |
| - name: Deploy Badges | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: "Update badges [skip ci] & cov_current.Rout" | |
| branch: gh-pages | |
| skip_fetch: true | |
| skip_checkout: true | |
| # Without this, will get Error: | |
| # Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under '/home/runner/work/coverage-badge-action/coverage-badge-action/action.yml'. | |
| # Did you forget to run actions/checkout before running your local action? | |
| - name: Checkout Back | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.ref }} |