Merge branch 'NFDI4Microbiota:develop' into develop

NFDI4Microbiota · Aug 12, 2024 · fe9f474 · fe9f474
2 parents 6f44d75 + e708c62
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diff --git a/Technical/BIOM_or_Tabular_Technical_Metadata.md b/Technical/BIOM_or_Tabular_Technical_Metadata.md
@@ -1,9 +1,9 @@
 ## 2.9 BIOM or tabular files
 
-| **metadata** | **definition**                                                                     | **examples**                 | **source**                                                                            |
-|-----------------|---------------------|------------------|-----------------|
-| run_ref      | Accessions/identifiers linking to the raw data (FASTQ)                             | e.g. accession = “ERR178314” | **Adapted from ENA** (“ENA How to Submit Other Analyses: Submitting Read Alignments”) |
-| sop          | Reference(s) to Standard Operating Procedures used in processing the raw sequences | e.g. PMID, DOI, URL          | **GSC MIXS: MIMARKSSpecimen** (“GSC MIXS: MIMARKSSpecimen”)                           |
+| **metadata** | **definition**                                                                                                                                                                                      | **reference of definition\[<url_to_definition>\]**                                                  | **expected unit of measurement**            | **example**                                      | **sources( where this or similar matadata field is mentioned)**                       |     |
+|--------|-----------|----------|---------|----------|----------|----------------|
+| run_ref      | Accessions/identifiers linking to the raw data (FASTQ)                                                                                                                                              | [Link to reference](https://ena-docs.readthedocs.io/en/latest/submit/analyses/read-alignments.html) | run_accession in the format SRR, ERR or DRR | e.g. RUN_REF accession = “ERR178314”             | **Adapted from ENA** (“ENA How to Submit Other Analyses: Submitting Read Alignments”) |     |
+| sop          | Reference(s) to Standard operating procedures used in generation of data or assembly and/or annotation of genomes, metagenomes or environmental sequences and link to text explanation of procedure | [MIXS:0000090](https://genomicsstandardsconsortium.github.io/mixs/0000090/)                         | PMID, DOI, URL                              | e.g. <https://doi.org/10.1038/s41586-020-2192-1> | **GSC MIXS: MIMARKSSpecimen** (“GSC MIXS: MIMARKSSpecimen”)                           |     |
 
 | Comments/questions: |
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