fix: correct log path for patric download

NBChub · Apr 18, 2024 · ef70724 · ef70724
1 parent a1f6da0
commit ef70724
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/patric.smk b/workflow/rules/patric.smk
@@ -11,5 +11,5 @@ else:
             "logs/patric/patric_genome_download-{patric}.log",
         shell:
             """
-            (cd data/interim/fasta && wget -qN "ftp://ftp.patricbrc.org/genomes/{wildcards.patric}/{wildcards.patric}.fna" 2> ../../../{log})
+            (cd data/interim/fasta && wget -qN "ftp://ftp.patricbrc.org/genomes/{wildcards.patric}/{wildcards.patric}.fna") 2>> {log}
             """