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Add test data for telseq #332

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5 changes: 5 additions & 0 deletions data/modules/telseq/telseq.output.01.tsv
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@@ -0,0 +1,5 @@
[f1.sorted.bam, f2.sorted.bam]
2 BAMs
ReadGroup Library Sample Total Mapped Duplicates LENGTH_ESTIMATE TEL0 TEL1 TEL2 TEL3 TEL4 TEL5 TEL6 TEL7 TEL8 TEL9 TEL10 TEL11 TEL12 TEL13 TEL14 TEL15 TEL16 GC0 GC1 GC2 GC3 GC4 GC5 GC6 GC7 GC8 GC9
SAMPLE1 SAMPLE1 SAMPLE1 11658310 11658310 0 0.0182633 11464434 192580 1248 24 15 5 1 2 1 0 0 0 0 0 0 0 0 661178 664193 648996 627435 603831 584302 564385 538213 497641 441152
SAMPLE2 SAMPLE2 SAMPLE2 12292241 12292241 0 0.048798 12088091 202798 1287 39 11 3 4 6 2 0 0 0 0 0 0 0 0 697038 687679 664909 633620 605132 580664 557628 529137 490983 436216
9 changes: 9 additions & 0 deletions data/modules/telseq/telseq.output.02.tsv
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@@ -0,0 +1,9 @@
[/home/lindenbaum-p/src/jvarkit-git/src/test/resources/S1.bam, /home/lindenbaum-p/src/jvarkit-git/src/test/resources/S2.bam, /home/lindenbaum-p/src/jvarkit-git/src/test/resources/S3.bam, /home/lindenbaum-p/src/jvarkit-git/src/test/resources/S4.bam, /home/lindenbaum-p/src/jvarkit-git/src/test/resources/S5.bam]
5 BAMs
ReadGroup Library Sample Total Mapped Duplicates LENGTH_ESTIMATE TEL0 TEL1 TEL2 TEL3 TEL4 TEL5 TEL6 TEL7 TEL8 TEL9 TEL10 TEL11 TEL12 TEL13 TEL14 TEL15 TEL16 GC0 GC1 GC2 GC3 GC4 GC5 GC6 GC7 GC8 GC9
S1 L1 S1 1999 1999 0 UNKNOWN 1984 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 108 68 92 20 36 5 7 9 2 3
S2 L2 S2 1999 1999 0 UNKNOWN 1977 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105 76 89 22 39 8 5 4 5 1
S3 L3 S3 1999 1999 0 UNKNOWN 1977 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 105 76 89 22 39 8 5 4 5 1
S4 L4 S4 1999 1999 0 UNKNOWN 1986 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 71 77 24 37 8 6 9 0 8
S5 L5 S5 999 999 0 UNKNOWN 989 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 33 52 15 18 3 2 4 1 1
S5b L5b S5 1000 1000 0 UNKNOWN 992 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 52 38 48 10 23 3 3 2 1 1
4 changes: 4 additions & 0 deletions data/modules/telseq/telseq.output.03.tsv
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[-]
1 BAMs
ReadGroup Library Sample Total Mapped Duplicates LENGTH_ESTIMATE TEL0 TEL1 TEL2 TEL3 TEL4 TEL5 TEL6 TEL7 TEL8 TEL9 TEL10 TEL11 TEL12 TEL13 TEL14 TEL15 TEL16 GC0 GC1 GC2 GC3 GC4 GC5 GC6 GC7 GC8 GC9
g12 g12 g12 653575 653575 0 UNKNOWN 637345 15628 600 0 2 0 0 0 0 0 0 0 0 0 0 0 0 28456 34569 40807 43579 49094 55990 62236 64467 57135 47796
4 changes: 4 additions & 0 deletions data/modules/telseq/telseq.output.04.tsv
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[g8.bam]
1 BAMs
ReadGroup Library Sample Total Mapped Duplicates LENGTH_ESTIMATE TEL0 TEL1 TEL2 TEL3 TEL4 TEL5 TEL6 TEL7 TEL8 TEL9 TEL10 TEL11 TEL12 TEL13 TEL14 TEL15 TEL16 GC0 GC1 GC2 GC3 GC4 GC5 GC6 GC7 GC8 GC9
g8 g8 g8 51662454 51662454 0 0.0307883 49152909 2142375 366865 151 101 25 1 5 13 6 0 0 0 2 1 0 0 3963654 3557682 3732924 3446566 3233591 3109489 2934015 2874760 2434643 1847415