Bioinformatics DNA Alignment

A simple python script to get the global alignment using either Dot Matrix (Window) or Needman-Wunch, or local alignment using Smith-Waterman.

Done as an assignment to CSE449: Bioinformatics @ Ain Shams University.

Example Output

Getting A local copy running

py -m venv venv
venv/Scripts/activate.bat
pip install -r requirements.txt

For bash, Replace the activate line with

source venv/Scripts/activate

Finally, Open the Examples Notebook (Examples.ipynb).

Built With

• VS Code - Code Editor

Contributing

Please read CONTRIBUTING.md for details on our code of conduct, and the process for submitting pull requests to us.

Versioning

We use SemVer for versioning. For the versions available, see the tags on this repository.

Authors

• Mohamed Said Sallam - Main Dev - TheDigitalPhoenixX

See also the list of contributors who participated in this project and their work in CONTRIBUTORS.md.

License

This project is licensed under the MIT License - see the LICENSE file for details

Acknowledgments

• README.md Template