Harmonise variable names from UM Stash to LFRic variable and long_name #1751
Workflow file for this run
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| name: Pull request checks | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - "main" | |
| workflow_dispatch: | |
| # Cancel running pull request checks if another commit is pushed. | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| py-ver: ["py310", "py311", "py312", "py313"] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| - name: Cache conda environment | |
| id: conda-env-cache | |
| uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a | |
| with: | |
| key: conda|${{runner.os}}-${{runner.arch}}|${{ hashFiles(format('requirements/locks/{0}-lock-linux-64.txt', matrix.py-ver)) }} | |
| path: | | |
| ~/conda-env | |
| ~/.local/share/cartopy | |
| - name: Create conda environment | |
| if: steps.conda-env-cache.outputs.cache-hit != 'true' | |
| run: | | |
| # Check cache hasn't pulled a partial key match. | |
| test ! -e "${HOME}/conda-env" | |
| conda create --prefix="${HOME}/conda-env" --file=requirements/locks/${{ matrix.py-ver }}-lock-linux-64.txt | |
| - name: Add conda environment to PATH | |
| run: echo "${HOME}/conda-env/bin" >> $GITHUB_PATH | |
| - name: Run tests | |
| env: | |
| PY_COLORS: "1" | |
| run: | | |
| # Install package and run pytest. | |
| echo '::group::Installing local package' | |
| python3 -m pip install -e . | |
| echo '::endgroup::' | |
| pytest --verbose --cov --cov-append --cov-config=pyproject.toml | |
| mv .coverage ".coverage.${{ matrix.py-ver }}" | |
| - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 | |
| with: | |
| name: coverage-data-${{ matrix.py-ver }} | |
| path: .coverage.* | |
| retention-days: 1 | |
| include-hidden-files: true | |
| coverage-report: | |
| if: github.event_name == 'pull_request' | |
| runs-on: ubuntu-latest | |
| needs: tests | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| - name: Setup python | |
| uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b | |
| with: | |
| python-version: "3.x" | |
| - name: Install coverage | |
| run: python3 -m pip install coverage | |
| - uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 | |
| with: | |
| pattern: coverage-data-* | |
| merge-multiple: true | |
| - name: Generate coverage report | |
| run: | | |
| coverage combine | |
| coverage html | |
| - name: Add report to PR | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| run: | | |
| # This links to a hosted version of the HTML report. | |
| tar -czf coverage-report.tar.gz htmlcov/ | |
| report_url="$(curl -sSf --data-binary @coverage-report.tar.gz https://tmpweb.net)" | |
| badge_options="$(coverage json --fail-under=0 -qo - | jq -r .totals.percent_covered_display)%25-blue?style=for-the-badge" | |
| echo "[](${report_url})" >> ${{ runner.temp }}/cov-report.md | |
| # Edit last comment if it exists, else create new one. | |
| if ! gh pr comment --edit-last ${{ github.head_ref }} --body-file ${{ runner.temp }}/cov-report.md ; then | |
| gh pr comment ${{ github.head_ref }} --body-file ${{ runner.temp }}/cov-report.md | |
| fi | |
| - name: Check 95% minimum coverage | |
| run: coverage report --fail-under=95 | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| - name: Set up Python | |
| uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b | |
| with: | |
| python-version: "3.x" | |
| - uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a | |
| with: | |
| key: pre-commit|${{runner.os}}-${{runner.arch}}|${{ env.pythonLocation }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
| path: ~/.cache/pre-commit | |
| - name: Set up pre-commit | |
| run: python3 -m pip install pre-commit | |
| - name: Run pre-commit | |
| env: | |
| RUFF_OUTPUT_FORMAT: github | |
| run: pre-commit run --show-diff-on-failure --color=always --all-files | |
| build-docs: | |
| if: github.event_name == 'pull_request' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | |
| - name: Cache conda environment | |
| id: conda-env-cache | |
| uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a | |
| with: | |
| key: conda|${{runner.os}}-${{runner.arch}}|${{hashFiles('requirements/locks/py312-lock-linux-64.txt')}} | |
| path: | | |
| ~/conda-env | |
| ~/.local/share/cartopy | |
| - name: Create conda environment | |
| if: steps.conda-env-cache.outputs.cache-hit != 'true' | |
| run: | | |
| # Check cache hasn't pulled a partial key match. | |
| test ! -e "${HOME}/conda-env" | |
| conda create --prefix="${HOME}/conda-env" --file=requirements/locks/py312-lock-linux-64.txt | |
| - name: Add conda environment to PATH | |
| run: echo "${HOME}/conda-env/bin" >> $GITHUB_PATH | |
| - name: Build documentation with Sphinx | |
| run: | | |
| # Install module so it can be imported during docs generation. | |
| echo '::group::Installing local package' | |
| python3 -m pip install . | |
| echo '::endgroup::' | |
| # Generate the documentation | |
| echo '::group::Building the documentation' | |
| sphinx-build -b html --color -W --keep-going "docs/source" "docs/build/html" | |
| echo '::endgroup::' | |
| - name: Upload documentation artifact | |
| uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 | |
| with: | |
| name: html-docs | |
| path: docs/build/html/ | |
| retention-days: 10 | |
| if-no-files-found: error |