Merge branch 'dev-pgd-hk' of github.com:Medical-Image-Analysis-Labora…

…tory/mialsuperresolutiontoolkit into dev-pgd-hk
Medical-Image-Analysis-Laboratory · Oct 30, 2020 · 7001fa7 · 7001fa7
2 parents 61a7fda + a4be1ef
commit 7001fa7
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Showing 2 changed files with 1 addition and 3 deletions.
diff --git a/documentation/conf.py b/documentation/conf.py
@@ -57,7 +57,7 @@ def visit_document(self, node):
                'nbsphinx']
 
 
-autodoc_mock_imports = ['nipype','cv2']
+autodoc_mock_imports = ['nipype','cv2', 'skimage']
 
 # Allow errors in notebooks for doc
 nbsphinx_allow_errors = True

diff --git a/pymialsrtk/interfaces/preprocess.py b/pymialsrtk/interfaces/preprocess.py
@@ -1266,8 +1266,6 @@ def _extractBrain(self, dataPath, modelCkptLoc, thresholdLoc, modelCkptSeg, thre
             if normalize:
                 if normalize == "local_max":
                      images[slice_counter, :, :, 0] = img_patch / np.max(img_patch)
-                elif normalize == "global_max":
-                     images[slice_counter, :, :, 0] = img_patch / max_val
                 elif normalize ==  "mean_std":
                      images[slice_counter, :, :, 0] = (img_patch-np.mean(img_patch))/np.std(img_patch)
                 else: