STYLE: Modified final result filenames

Medical-Image-Analysis-Laboratory · Jun 10, 2020 · 668b278 · 668b278
1 parent 319619c
commit 668b278
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/pymialsrtk/pipelines/anatomical/srr.py b/pymialsrtk/pipelines/anatomical/srr.py
@@ -303,14 +303,14 @@ def create_workflow(bids_dir, process_dir, subject, p_stacksOrder, session=None,
     if srID is None:
         for stack in p_stacksOrder:
 
-            print( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', '    --->     ',sub_ses+'_run-'+str(stack)+'_T2w_preproc.nii.gz')
-            substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', sub_ses+'_run-'+str(stack)+'_T2w_preproc.nii.gz') )
+            print( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', '    --->     ',sub_ses+'_run-'+str(stack)+'_desc-preproc_T2w.nii.gz')
+            substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm.nii.gz', sub_ses+'_run-'+str(stack)+'_desc-preproc_T2w.nii.gz') )
 
             print( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm_transform_'+str(len(p_stacksOrder))+'V.txt', '    --->     ', sub_ses+'_run-'+str(stack)+'_T2w_from-origin_to-SDI_mode-image_xfm.txt')
             substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_nlm_uni_bcorr_histnorm_transform_'+str(len(p_stacksOrder))+'V.txt', sub_ses+'_run-'+str(stack)+'_T2w_from-origin_to-SDI_mode-image_xfm.txt') )
 
-            print( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', '    --->     ', sub_ses+'_run-'+str(stack)+'_T2w_desc-LRmask.nii.gz')
-            substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', sub_ses+'_run-'+str(stack)+'_T2w_desc-LRmask.nii.gz') )
+            print( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', '    --->     ', sub_ses+'_run-'+str(stack)+'_desc-LRmask_T2w.nii.gz')
+            substitutions.append( ( sub_ses+'_run-'+str(stack)+'_T2w_uni_bcorr_histnorm_LRmask.nii.gz', sub_ses+'_run-'+str(stack)+'_desc-LRmask_T2w.nii.gz') )
 
 
         print( 'SDI_'+sub_ses+'_'+str(len(p_stacksOrder))+'V_rad1.nii.gz', '    --->     ', sub_ses+'_rec-SDI_T2w.nii.gz')