Increase flexibility of sigmoids #436
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| name: binding-tests | |
| on: | |
| push: | |
| branches: | |
| - release | |
| - main | |
| pull_request: {} | |
| env: | |
| CONDA_CACHE_NUMBER: 0 # increase to reset cache manually | |
| jobs: | |
| build-tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Store Date | |
| shell: bash -l {0} | |
| run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| - name: Checkout MParT | |
| uses: actions/checkout@v3 | |
| with: | |
| path: mpart | |
| - name: Use Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: test | |
| use-mamba: true | |
| auto-update-conda: true | |
| python-version: "3.8" | |
| - name: Cache Conda Deps | |
| uses: actions/cache@v3 | |
| id: cache-conda | |
| with: | |
| path: /usr/share/miniconda3/envs/test | |
| key: cache-conda-${{ hashFiles('mpart/.github/environment.yml') }}-${{ env.DATE }}-${{ env.CONDA_CACHE_NUMBER }}-BINDINGS | |
| - name: Install Conda Dependencies | |
| shell: bash -l {0} | |
| run: mamba env update -n test -f $GITHUB_WORKSPACE/mpart/.github/environment.yml | |
| if: steps.cache-conda.outputs.cache-hit != 'true' | |
| - name: Setup Julia | |
| run: | | |
| julia -e "using Pkg; Pkg.add([Pkg.PackageSpec(;name=\"CxxWrap\",version=v\"0.14.2\"),Pkg.PackageSpec(;name=\"TestReports\")])" | |
| export GITHUB_JULIA_PATH=$(julia -e "println(DEPOT_PATH[1])") | |
| echo -n $'[bee5971c-294f-5168-9fcd-9fb3c811d495]\nMParT = \"' >> $GITHUB_JULIA_PATH/artifacts/Overrides.toml | |
| echo -n $GITHUB_WORKSPACE >> $GITHUB_JULIA_PATH/artifacts/Overrides.toml | |
| echo -n "/MPART_INSTALL\"" >> $GITHUB_JULIA_PATH/artifacts/Overrides.toml | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v1 | |
| - name: Cache Kokkos | |
| uses: actions/cache@v3 | |
| id: cache-kokkos | |
| with: | |
| path: "${{ github.workspace }}/KOKKOS_INSTALL" | |
| key: kokkos4.2.00 | |
| - if: ${{steps.cache-kokkos.outputs.cache-hit != 'true'}} | |
| name: Checkout Kokkos | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: kokkos/kokkos | |
| path: kokkos | |
| ref: '4.2.00' | |
| - if: ${{steps.cache-kokkos.outputs.cache-hit != 'true'}} | |
| name: Install Kokkos | |
| run: | | |
| cd $GITHUB_WORKSPACE/kokkos | |
| mkdir build && cd build | |
| cmake -DKokkos_ENABLE_THREADS=ON \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DKokkos_ENABLE_SERIAL=ON \ | |
| -DCMAKE_CXX_STANDARD=17 \ | |
| -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/KOKKOS_INSTALL/ \ | |
| ../ | |
| sudo make -j2 install | |
| - name: Configure MParT | |
| shell: bash -l {0} | |
| run: | | |
| cd $GITHUB_WORKSPACE/mpart | |
| mkdir build && cd build | |
| cmake -DKokkos_DIR=$GITHUB_WORKSPACE/KOKKOS_INSTALL/lib/cmake/Kokkos \ | |
| -DMPART_FETCH_DEPS=OFF \ | |
| -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/MPART_INSTALL/ \ | |
| ../ | |
| - name: Build MParT | |
| shell: bash -l {0} | |
| run: cd $GITHUB_WORKSPACE/mpart/build; make -j2 install | |
| - name: Run Python Tests | |
| continue-on-error: true | |
| shell: bash -l {0} | |
| run: | | |
| export PYTHONPATH=$PYTHONPATH:$GITHUB_WORKSPACE/MPART_INSTALL/python | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$GITHUB_WORKSPACE/MPART_INSTALL/python:$GITHUB_WORKSPACE/MPART_INSTALL/lib | |
| pytest $GITHUB_WORKSPACE/mpart/bindings/python/tests -v --junitxml="$GITHUB_WORKSPACE/test-results-python.xml" | |
| - name: Run Julia Tests | |
| continue-on-error: true | |
| shell: bash -l {0} | |
| run: | | |
| julia -e "using Pkg; Pkg.add(url=\"https://github.com/MeasureTransport/MParT.jl\"); using TestReports; TestReports.test(\"MParT\",logfilepath=ENV[\"GITHUB_WORKSPACE\"], logfilename=\"test-results-julia.xml\")" | |
| - name: Setup Matlab Tests | |
| continue-on-error: true | |
| shell: bash -l {0} | |
| run: | | |
| export LD_LIBRARY_PATH=/usr/local/lib64:$LD_LIBRARY_PATH | |
| sed -i "1s|^|addpath(genpath(\'$GITHUB_WORKSPACE/MPART_INSTALL\'))\n|" $GITHUB_WORKSPACE/mpart/bindings/matlab/tests/runtests.m | |
| cat $GITHUB_WORKSPACE/mpart/bindings/matlab/tests/runtests.m | |
| - name: Run Matlab Tests | |
| continue-on-error: true | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: addpath('${{ github.workspace }}/mpart/bindings/matlab/tests/'), runtests | |
| - name: Publish Unit Test Results | |
| uses: EnricoMi/publish-unit-test-result-action@v2 | |
| if: always() | |
| with: | |
| check_name: "Test Results with Bindings" | |
| junit_files: ${{ github.workspace }}/test-results-*.xml |