Comparative genomics of bioluminescent organisms.
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| Analysis | Input | Program | Output | Visualizations |
|---|---|---|---|---|
| Phylogenetic Analysis | 16S rRNA sequences | phyloT, Archaeopteryx | newick file | phylogenetic tree |
| Structural Annotation | Genome sequences | Prokka | Predicted ORFs (+ more) | N/A |
| Functional Annotation | Predicted ORFs | pfastGO | Homologs, GO terms, KEGG pathways | Heat map |
| GO Term Comparison | Genome sequences | eggNog-mapper | Complete GO term sets | Heat map |
| Synteny Analysis | Genome Sequences & .gbk files | Mauve | Synteny viewer | Diagram of synteny between the genomes |