code repository
license

Common package for integrating with Mass Dynamics workflows

Installation

To install md_dataset from GitHub repository, do:

git clone git@github.com:MassDynamics/md_dataset.git
cd md_dataset
python -m pip install .

To develop the package:

python -m pip install -e '.[dev]'
ruff check
pytest

Documentation

R implementation

To run a dataset locally, you can using localstack:

USE_LOCALSTACK=true

To use an AWS source buckets:

RESULTS_BUCKET=bucket-name
BOTO3_PROFILE=your-profile

These will both use a local prefect installation.

Credits

This initial package was created with Copier and the NLeSC/python-template.