1.4.0 (2025-02-02)
- updated github actions workflow. checking formatting of yaml files using prettier (f3b63b7)
1.3.0 (2025-01-22)
- updated github actions workflows (9527b3a)
1.2.0 (2024-11-07)
- added global env directive, closes #11 (f9dd861)
- handling of conditions and replicates in output and report; closes #16 (3b868c4)
1.1.0 (2024-09-27)
- added complete list of parameters + readme for wf-catalog; closes #5 (d9b10b8)
- added schemas for sample sheet and config files (5b69264)
- added wf catalog config file (9441f4c)
- link to default riboseq protocol(s) (6191dce)
- corrected path for GH actions status badge (9375350)
- removed defaults channel from conda envs; closes #10 (2d07dd8)
- removed notes about modules; closes #12 (eded36d)
- typos in report (b5b609f)
- adapted read shifting to pipeline, make bam export default (f29761d)
- added description to run examples (4b31486)
- added report for workflow results (31bb75a)
- added rule to calculate basic gene-wise statistics (18e316c)
- added wf overview figure, closes #4 (dcc8a1a)
- bring genome work on par with current state of small-orfs pipe (8bd026c)
- prepared wf to run test data; removed unused conf options; snakefmt + linting (d351622)
- added dev branch to gh actions workflow (051de2c)
- added missing channels for env definitions (5184b38)
- added missing options for gff source type (2ee01d5)
- bug in PCA plotting vars (bfa3cd6)
- changed protocol name (6bc4dc6)
- changed protocol name in README (1702026)
- cleaned plot_mapping_length script and added logging output, closes #3 (5fb31af)
- make fastqc run quietly (no progress printed to terminal) (930b55c)
- remove sORF related steps (1c2ff00)
- removed run_workflow.sh script. (0742005)
- removed unnecessary params (b357ab9)
- snakefmt error (a4dd408)
- updated release please workflow (b71b2e4)