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Merged
merged 1 commit into from
Apr 28, 2020
Merged

Add a daily output test case to QU240 #535

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14 changes: 14 additions & 0 deletions testing_and_setup/compass/ocean/global_ocean/QU240/daily_output_test/config_driver.xml
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<driver_script name="run.py">
<case name="test">
<step executable="./run.py" quiet="true" pre_message=" * Running test" post_message=" - Complete"/>
</case>
<validation>
<compare_fields file1="test/analysis_members/mpaso.hist.am.timeSeriesStatsDaily.0001-01-01.nc">
<field name="timeDaily_avg_temperature" l1_norm="0.0" l2_norm="0.0" linf_norm="0.0"/>
<field name="timeDaily_avg_salinity" l1_norm="0.0" l2_norm="0.0" linf_norm="0.0"/>
<field name="timeDaily_avg_layerThickness" l1_norm="0.0" l2_norm="0.0" linf_norm="0.0"/>
<field name="timeDaily_avg_normalVelocity" l1_norm="0.0" l2_norm="0.0" linf_norm="0.0"/>
<field name="timeDaily_avg_ssh" l1_norm="0.0" l2_norm="0.0" linf_norm="0.0"/>
</compare_fields>
</validation>
</driver_script>
128 changes: 128 additions & 0 deletions testing_and_setup/compass/ocean/global_ocean/QU240/daily_output_test/config_test.xml
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<?xml version="1.0"?>
<config case="test">
<add_link source="../../init/initial_state/initial_state.nc" dest="init.nc"/>
<add_link source="../../init/initial_state/graph.info" dest="graph.info"/>
<add_link source="../../init/initial_state/init_mode_forcing_data.nc" dest="forcing_data.nc"/>

<namelist name="namelist.ocean" mode="forward">
<template file="template_forward.xml" path_base="script_configuration_dir"/>
<template file="template_forward.xml" path_base="script_resolution_dir"/>
<template file="template_daily_output.xml" path_base="script_configuration_dir"/>
<option name="config_run_duration">'0001_00:00:00'</option>
<option name="config_pio_num_iotasks">1</option>
<option name="config_pio_stride">4</option>
</namelist>

<streams name="streams.ocean" keep="immutable" mode="forward">
<stream name="mesh">
<attribute name="filename_template">init.nc</attribute>
</stream>
<stream name="input">
<attribute name="filename_template">init.nc</attribute>
</stream>
<template file="template_forward.xml" path_base="script_configuration_dir"/>
<template file="minimal_output.xml" path_base="script_core_dir" path="templates/streams"/>
<template file="template_daily_output.xml" path_base="script_configuration_dir"/>
<stream name="timeSeriesStatsDailyOutput">
<add_contents>
<member name="daysSinceStartOfSim" type="var"/>
<member name="ssh" type="var"/>
<member name="daysSinceStartOfSim" type="var"/>
<member name="binBoundaryMerHeatTrans" type="var"/>
<member name="ssh" type="var"/>
<member name="tracers" type="var_struct"/>
<member name="velocityMeridional" type="var"/>
<member name="velocityZonal" type="var"/>
<member name="layerThickness" type="var"/>
<member name="density" type="var"/>
<member name="potentialDensity" type="var"/>
<member name="windStressZonal" type="var"/>
<member name="windStressMeridional" type="var"/>
<member name="frazilLayerThicknessTendency" type="var"/>
<member name="avgValueWithinOceanRegion" type="var_array"/>
<member name="avgValueWithinOceanLayerRegion" type="var_array"/>
<member name="avgValueWithinOceanVolumeRegion" type="var_array"/>
<member name="meridionalHeatTransportLatZ" type="var"/>
<member name="meridionalHeatTransportLat" type="var"/>
<member name="minGlobalStats" type="var_array"/>
<member name="maxGlobalStats" type="var_array"/>
<member name="sumGlobalStats" type="var_array"/>
<member name="rmsGlobalStats" type="var_array"/>
<member name="avgGlobalStats" type="var_array"/>
<member name="vertSumMinGlobalStats" type="var_array"/>
<member name="vertSumMaxGlobalStats" type="var_array"/>
<member name="tThreshMLD" type="var"/>
<member name="dThreshMLD" type="var"/>
<member name="normalVelocity" type="var"/>
<member name="vertVelocityTop" type="var"/>
<member name="normalGMBolusVelocity" type="var"/>
<member name="vertGMBolusVelocityTop" type="var"/>
<member name="GMBolusVelocityZonal" type="var"/>
<member name="GMBolusVelocityMeridional" type="var"/>
<member name="kappaGMCell" type="var"/>
<member name="cGMphaseSpeed" type="var"/>
<member name="velocityZonalTimesTemperature_GM" type="var"/>
<member name="velocityMeridionalTimesTemperature_GM" type="var"/>
<member name="tracersSurfaceFlux" type="var_struct"/>
<member name="penetrativeTemperatureFlux" type="var"/>
<member name="latentHeatFlux" type="var"/>
<member name="sensibleHeatFlux" type="var"/>
<member name="longWaveHeatFluxUp" type="var"/>
<member name="longWaveHeatFluxDown" type="var"/>
<member name="seaIceHeatFlux" type="var"/>
<member name="shortWaveHeatFlux" type="var"/>
<member name="evaporationFlux" type="var"/>
<member name="seaIceSalinityFlux" type="var"/>
<member name="seaIceFreshWaterFlux" type="var"/>
<member name="riverRunoffFlux" type="var"/>
<member name="iceRunoffFlux" type="var"/>
<member name="rainFlux" type="var"/>
<member name="snowFlux" type="var"/>
<member name="vertNonLocalFlux" type="var"/>
<member name="activeTracersTend" type="var_array"/>
<member name="salinitySurfaceRestoringTendency" type="var"/>
<member name="activeTracerHorizontalAdvectionTendency" type="var_array"/>
<member name="activeTracerVerticalAdvectionTendency" type="var_array"/>
<member name="activeTracerVertMixTendency" type="var_array"/>
<member name="activeTracerSurfaceFluxTendency" type="var_array"/>
<member name="temperatureShortWaveTendency" type="var_array"/>
<member name="activeTracerNonLocalTendency" type="var_array"/>
<member name="areaCellGlobal" type="var"/>
<member name="areaEdgeGlobal" type="var"/>
<member name="areaTriangleGlobal" type="var"/>
<member name="volumeCellGlobal" type="var"/>
<member name="volumeEdgeGlobal" type="var"/>
<member name="CFLNumberGlobal" type="var"/>
<member name="vertDiffTopOfCell" type="var"/>
<member name="vertViscTopOfCell" type="var"/>
<member name="bulkRichardsonNumber" type="var"/>
<member name="boundaryLayerDepth" type="var"/>
<member name="columnIntegratedSpeed" type="var"/>
<member name="landIceFreshwaterFlux" type="var"/>
<member name="landIceHeatFlux" type="var"/>
<member name="heatFluxToLandIce" type="var"/>
<member name="mocStreamvalLatAndDepth" type="var"/>
<member name="mocStreamvalLatAndDepthRegion" type="var"/>
<member name="binBoundaryMocStreamfunction" type="var"/>
<member name="surfaceBuoyancyForcing" type="var"/>
<member name="tendLayerThickness" type="var"/>
<member name="boundaryLayerDepthSmooth" type="var"/>
<member name="pressureAdjustedSSH" type="var"/>
<member name="SSHSquared" type="var"/>
<member name="velocityZonalSquared" type="var"/>
<member name="velocityMeridionalSquared" type="var"/>
<member name="velocityZonalTimesTemperature" type="var"/>
<member name="velocityMeridionalTimesTemperature" type="var"/>
<member name="activeTracerVerticalAdvectionTopFlux" type="var_array"/>
<member name="activeTracerHorizontalAdvectionEdgeFlux" type="var_array"/>
</add_contents>
</stream>
</streams>

<run_script name="run.py">
<step executable="gpmetis">
<argument flag="graph.info">4</argument>
</step>
<model_run procs="4" threads="1" namelist="namelist.ocean" streams="streams.ocean"/>
</run_script>
</config>
18 changes: 18 additions & 0 deletions testing_and_setup/compass/ocean/global_ocean/template_daily_output.xml
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<template>
<namelist>
<option name="config_AM_timeSeriesStatsDaily_enable">.true.</option>
<option name="config_AM_timeSeriesStatsDaily_restart_stream">'none'</option>
</namelist>
<streams>
<stream name="timeSeriesStatsDailyOutput">
<attribute name="type">output</attribute>
<attribute name="filename_template">analysis_members/mpaso.hist.am.timeSeriesStatsDaily.$Y-$M-$D.nc</attribute>
<attribute name="output_interval">00-00-01_00:00:00</attribute>
<attribute name="clobber_mode">truncate</attribute>
<add_contents>
<member name="daysSinceStartOfSim" type="var"/>
<member name="ssh" type="var"/>
</add_contents>
</stream>
</streams>
</template>