Dependencies using vcpkg

.gitignore

@@ -82,3 +82,4 @@ CMakeFiles
 CMakeCache.txt
 cmake_install.cmake
 
+/Code.v05-00/vcpkg_installed/

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "Code.v05-00/submodules/vcpkg"]
+	path = Code.v05-00/submodules/vcpkg
+	url = https://github.com/Microsoft/vcpkg.git

Code.v05-00/CMakeLists.txt

@@ -1,5 +1,8 @@
 cmake_minimum_required(VERSION 3.16)
 
+set(CMAKE_TOOLCHAIN_FILE "${CMAKE_CURRENT_SOURCE_DIR}/submodules/vcpkg/scripts/buildsystems/vcpkg.cmake"
+  CACHE STRING "Vcpkg toolchain file")
+
 project(APCEMM)
 
 # Options
@@ -27,66 +30,41 @@ execute_process(COMMAND git rev-parse --short HEAD
                     OUTPUT_STRIP_TRAILING_WHITESPACE)
 
 set(APCEMM_VERSION_BUILD_NUMBER "${APCEMM_VERSION_BUILD_NUMBER}" CACHE STRING "Git Version/Commit Hash")
-set(CMAKE_CXX_STANDARD 17)
+set(CMAKE_CXX_STANDARD 20)
 configure_file(${CMAKE_SOURCE_DIR}/include/APCEMM.h.in ${CMAKE_SOURCE_DIR}/include/APCEMM.h @ONLY)
 
-# Include .cmake files in this directory to find the required packages
-list(APPEND CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/cmake)
-
-# Automated discovert of netCDF using netCDF config
-# Find nc-config and ncxx4-config
-find_program(NC_CONFIG NAMES "nc-config" DOC "Location of nc-config utility")
-find_program(NCXX_CONFIG NAMES "ncxx4-config" DOC "Location of ncxx4-config utility")
-
-# A function to call nx-config with an argument, and append the resulting path to a list
-function(inspect_netcdf_config VAR NX_CONFIG ARG)
-    execute_process(
-        COMMAND ${NX_CONFIG} ${ARG}
-        OUTPUT_VARIABLE NX_CONFIG_OUTPUT
-        OUTPUT_STRIP_TRAILING_WHITESPACE
-    )
-    if(EXISTS "${NX_CONFIG_OUTPUT}")
-        list(APPEND ${VAR} ${NX_CONFIG_OUTPUT})
-        set(${VAR} ${${VAR}} PARENT_SCOPE)
-    endif()
-endfunction()
+# Defines the 'main' file we want to create a binary of
+add_executable(${PROJECT_NAME} ${CMAKE_SOURCE_DIR}/src/Core/Main.cpp)
+
+
+# Dependencies managed by vcpkg:
+
+find_package(Boost REQUIRED)
+# All the Boost libraries we use are header-only, so no need to link here.
+
+find_package(Catch2 CONFIG REQUIRED)
+target_link_libraries(${PROJECT_NAME} PRIVATE Catch2::Catch2 Catch2::Catch2WithMain)
 
-# Add nc-config and ncxx4-config paths to CMAKE_PREFIX_PATH
-inspect_netcdf_config(CMAKE_PREFIX_PATH "${NC_CONFIG}" "--prefix")
-inspect_netcdf_config(CMAKE_PREFIX_PATH "${NCXX_CONFIG}" "--prefix")
+find_package(Eigen3 CONFIG REQUIRED)
+target_link_libraries(${PROJECT_NAME} PRIVATE Eigen3::Eigen)
+
+find_package(FFTW3 CONFIG REQUIRED)
+target_link_libraries(${PROJECT_NAME} PRIVATE FFTW3::fftw3)
+
+find_package(netCDFCxx CONFIG REQUIRED)
+target_link_libraries(${PROJECT_NAME} PRIVATE netCDF::netcdf netCDF::netcdf-cxx4)
+
+find_package(yaml-cpp CONFIG REQUIRED)
+target_link_libraries(${PROJECT_NAME} PRIVATE yaml-cpp::yaml-cpp)
+
+# Other dependencies:
 
-# Find packages
-find_package(NetCDF REQUIRED)
-find_package(netCDFCxx REQUIRED)
-find_package(FFTW REQUIRED)
 find_package(OpenMP REQUIRED)
-#find_package(Catch2 3 REQUIRED)
-find_package(yaml-cpp REQUIRED)
-find_package(Eigen3 3.3 REQUIRED)
-
-# Try to get Catch2 automatically
-Include(FetchContent)
-
-FetchContent_Declare(
-  Catch2
-  GIT_REPOSITORY https://github.com/catchorg/Catch2.git
-  GIT_TAG        v3.0.1 # or a later release
-#  FIND_PACKAGE_ARGS # No specific args - but this ensure find_package runs first
-)
-#TODO: Figure out why FIND_PACKAGE_ARGS causes chaos
-
-#FetchContent_Declare(
-#        yaml-cpp
-#        GIT_REPOSITORY https://github.com/jbeder/yaml-cpp.git
-#        GIT_TAG 4aad2b1666a4742743b04e765a34742512915674
-#)
-
-#set(YAML_CPP_BUILD_TESTS OFF)
-# This should attempt to find the package, and will download if not found
-FetchContent_MakeAvailable(Catch2)
-#FetchContent_MakeAvailable(Catch2 yaml-cpp)
+target_link_libraries(${PROJECT_NAME} PRIVATE OpenMP::OpenMP_CXX)
+
 
 # This ensures the header files of the necessary libraries are included
+include_directories(${Boost_INCLUDES})
 include_directories(${OpenMP_INCLUDES})
 include_directories(${FFTW_INCLUDES})
 include_directories(${NETCDF_INCLUDES})
@@ -99,13 +77,9 @@ include_directories(${CMAKE_SOURCE_DIR}/include)
 # This ensures that the CMakeLists.txt in src/ gets build
 add_subdirectory(${CMAKE_SOURCE_DIR}/src)
 
-# Defines the 'main' file we want to create a binary of 
-add_executable(${PROJECT_NAME} ${CMAKE_SOURCE_DIR}/src/Core/Main.cpp)
-
 # Defines the libraries necessary for compiling the executable
-target_link_libraries(${PROJECT_NAME}
-                      ${netCDFCxx_LIBRARIES} ${NETCDF_LIBRARIES} ${FFTW_LIBRARIES} ${YAML_CPP_LIBRARIES}
-                      OpenMP::OpenMP_CXX Eigen3::Eigen FVM_ANDS Util AIM KPP EPM Core YamlInputReader LAGRID)
+target_link_libraries(${PROJECT_NAME} PRIVATE
+                      FVM_ANDS Util AIM KPP EPM Core YamlInputReader LAGRID)
 
 # Tests
 #if (BUILD_TEST)