unable to create mask in MITK diffustion

[lvxy-wwy]

In newest version, lables or ROIs could not create masks so that could not select ROI in IVIM windows.

[peterneher]

Hi. THis is indeed an issue since MITK changed to multi-label images. I never updated MITK Diffusion. Nevertheless, a workaround is to save the segmentation and when loading it again, select "ITK NrrdImageIO" as file reader. The loaded segmentation should work in IVIM.

[peterneher]

@kislinsk is there an easier way to get a binary image from a single label?

[kislinsk]

Yes, you can do it in the Segmentation Utilities:

[lvxy-wwy]

是的，您可以在分段实用程序中执行此操作：

There is no ‘extract from segmentation’ tool in my mitk diffusion version windows10 2023.06.06 (https://www.mitk.org/download/diffusion/nightly/). Can you provide an older version of mitk diffusion?

[peterneher]

MITK Diffusion is currently based on an older MITK version that does not support this directly. SO for the time being, you are stuck with the saving/loading way.

[peterneher]

I uploaded a new version to https://www.mitk.org/download/diffusion/nightly/

"extract from segmentation" should work there. Could you check if this works for you?

[ElvisChen7]

I uploaded a new version to https://www.mitk.org/download/diffusion/nightly/

"extract from segmentation" should work there. Could you check if this works for you?

I met the same issue with MITK-diffusion (version 2023.06.06) on Windows 10, downloaded from the URL you provided: https://www.mitk.org/download/diffusion/nightly/.
There seems to be no "Extract from Segmentation" button. Could you provide a demonstration or guide on how to use this feature?

[lvxy-wwy]

I uploaded a new version to https://www.mitk.org/download/diffusion/nightly/
"extract from segmentation" should work there. Could you check if this works for you?

I met the same issue with MITK-diffusion (version 2023.06.06) on Windows 10, downloaded from the URL you provided: https://www.mitk.org/download/diffusion/nightly/. There seems to be no "Extract from Segmentation" button. Could you provide a demonstration or guide on how to use this feature?

[lvxy-wwy]

I uploaded a new version to https://www.mitk.org/download/diffusion/nightly/
"extract from segmentation" should work there. Could you check if this works for you?

I met the same issue with MITK-diffusion (version 2023.06.06) on Windows 10, downloaded from the URL you provided: https://www.mitk.org/download/diffusion/nightly/. There seems to be no "Extract from Segmentation" button. Could you provide a demonstration or guide on how to use this feature?

The uploaded version (2024.11.26) is based on Ubuntu.

[peterneher]

Hi. Yes, there are currently no up-to-date Windows installers. I'm not sure when I will get around to build them, but I will add it to my list. You could try the standard MITK Workbench (non-diffusion) for this extraction. Could you let me know if this would be a workaround for you? https://www.mitk.org/wiki/The_Medical_Imaging_Interaction_Toolkit_(MITK)