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Can Trimmomatic be skipped while running Wochenende ?

Status: Open.

#223 In MHH-RCUG/Wochenende;

· arpit20328 opened on Sep 3, 2024

When input cfdna fastq data is masked (human reads are masked)

Status: Open.

#222 In MHH-RCUG/Wochenende;

· arpit20328 opened on Aug 30, 2024

Definition of long and short read in wochenende

Status: Open.

#221 In MHH-RCUG/Wochenende;

· arpit20328 opened on Apr 4, 2024

Not able to find "AlignerBoost.jar" on internet .

Status: Open.

#220 In MHH-RCUG/Wochenende;

· arpit20328 opened on Mar 27, 2024

Not able to find file named "adapters_solid.fa"

Status: Open.

#219 In MHH-RCUG/Wochenende;

· arpit20328 opened on Mar 27, 2024

remove alignerboost code

Status: Open.

#212 In MHH-RCUG/Wochenende;

· colindaven opened on Mar 9, 2022

reporting errors

Status: Open.

#206 In MHH-RCUG/Wochenende;

· colindaven opened on Jan 24, 2022

bbsplit attempt

Status: Open.

#202 In MHH-RCUG/Wochenende;

· colindaven opened on Dec 6, 2021

upgrade minimap2

Status: Open.

#198 In MHH-RCUG/Wochenende;

· colindaven opened on Nov 19, 2021

use fastp as about twice as fast as fastqc - test

Status: Open.

#196 In MHH-RCUG/Wochenende;

· colindaven opened on Nov 9, 2021

create optional cleanup script, especially for reporting.

Status: Open.

#181 In MHH-RCUG/Wochenende;

· colindaven opened on Sep 29, 2021

Trial tiebrush instead of mapping quality MQ

Status: Open.

#174 In MHH-RCUG/Wochenende;

· colindaven opened on Sep 8, 2021