New results from c3potato

results/c3potato/441e2c67-conda-py3.9-Cython-mdanalysistests-numpy-scipy.json

@@ -0,0 +1 @@
+{"commit_hash": "441e2c67abdb8a0a5ffac4a0bc5e88bc7c329aa8", "env_name": "conda-py3.9-Cython-mdanalysistests-numpy-scipy", "date": 1732744635000, "params": {"arch": "x86_64", "cpu": "Intel(R) Xeon(R) CPU E3-1226 v3 @ 3.30GHz", "machine": "c3potato", "os": "Linux 3.16.0-4-amd64", "ram": "16GB", "python": "3.9", "Cython": "", "numpy": "", "scipy": "", "mdanalysistests": ""}, "python": "3.9", "requirements": {"Cython": "", "numpy": "", "scipy": "", "mdanalysistests": ""}, "env_vars": {}, "result_columns": ["result", "params", "version", "started_at", "duration", "stats_ci_99_a", "stats_ci_99_b", "stats_q_25", "stats_q_75", "stats_number", "stats_repeat", "samples", "profile"], "results": {"GRO.GROReadBench.time_create_GRO_universe": [null, [], "85e9386a1154d866631322425b43e682903a28a89efb74527110189dcbd24a4a", 1732790164003], "GRO.GROReadBench.time_parse_GRO_file": [null, [], "7d0bec284a3cc88727c887e20b4d7a7a6fb3dc8b9a3fed98a8bee728f5920227", 1732790164003], "GRO.GROReadBench.time_read_GRO_coordinates": [null, [], "987e7a4b2431ce8645e1a4d7c1135f76c9b35e5eb29b0f6818860f96531be147", 1732790164003], "ag_methods.AtomGroupMethodsBench.time_bbox_no_pbc": [null, [["10", "100", "1000", "10000"]], "f4d3c92e8dc5efa1a09726e3c1dea49453d5625ee6952475869546919575a0ed", 1732790164003], "ag_methods.AtomGroupMethodsBench.time_bbox_pbc": [null, [["10", "100", "1000", "10000"]], "02deed74348541e19fd7811f9aa232bd53410903de3a1432d7cc090a3184198e", 1732790164003], "ag_methods.AtomGroupMethodsBench.time_bsphere_no_pbc": [null, [["10", "100", "1000", "10000"]], "7f229e23767623d3052357b0d2e36620742990cbec01fa9df982997a64d0b558", 1732790164003], "ag_methods.AtomGroupMethodsBench.time_bsphere_pbc": [null, [["10", "100", "1000", "10000"]], "669f068c60e5023f28ea98225386244efdd0907ea6895c590088cfd170bef050", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_center_no_pbc": [null, [["10", "100", "1000", "10000"]], "5499bbde1d376804c4c410b7cac45ebc709dc4065d374891ccaca4c67b497d8d", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_center_pbc": [null, [["10", "100", "1000", "10000"]], "9e281b5399aef60e0a823b2a228dee94c0e31bd95d8806c1e15b861cf23d83b6", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_centroid_no_pbc": [null, [["10", "100", "1000", "10000"]], "56366be992afa8468328495085d4bd7f270fe821af6b4412e097e071a5841aba", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_centroid_pbc": [null, [["10", "100", "1000", "10000"]], "7ce43af0540e7c4b35689a263dfc228d0a4a2d2d92727d2d44b1e397c32a8726", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_concatenate": [null, [["10", "100", "1000", "10000"]], "d5249c87dfce2c91bde201106b2e4198849051c93364564de86ce872159c1428", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_difference": [null, [["10", "100", "1000", "10000"]], "56ce3f2f2c4257dee720e7b07315ce2595afc66137f7324b405ebfb060e65dd3", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_groupby": [null, [["10", "100", "1000", "10000"]], "e42dfd364b2726e568511c4eae084feead8bd62e3ac3d2046ca6c0ae2a061363", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_guess_bonds": [null, [["10", "100", "1000", "10000"]], "b22111561b487e88b079412e82b48de4d70d39b0c868ec64305cebdcdf3ecd0b", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_intersection": [null, [["10", "100", "1000", "10000"]], "af81d67c8ba6789db6632156d5ee37d16c1d7145bc51d97faf62f5a44e71a216", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_is_strict_subset": [null, [["10", "100", "1000", "10000"]], "4dff2b0102568196662f408ec7682e479b1f28f3c0811e1d09928f67803ff1fd", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_is_strict_superset": [null, [["10", "100", "1000", "10000"]], "2c81f4e274971df7fb627c5c8e82a821572d65175a56f86824b9a5d644170653", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_isdisjoint": [null, [["10", "100", "1000", "10000"]], "9573a798d7d80b64066ae7114626b83b763312b43c4435eac392b8c0d3fb8a08", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_issubset": [null, [["10", "100", "1000", "10000"]], "f6bd03304591ed1af9f0654198f07148f408505a8ba8d1ec24c4613d5980686b", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_issuperset": [null, [["10", "100", "1000", "10000"]], "da0c4343c5544f68e3ee19e45eb427df5f51ad6fdf3d3a1380d864a310e832f1", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_pack_into_box": [null, [["10", "100", "1000", "10000"]], "54f8934b8fe61ba797a7909743b108e39de31f183b1e1ae485cf0f6ce32462c7", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_rotate": [null, [["10", "100", "1000", "10000"]], "6e1749c80e708a81dc9b1c9e930f935e6c602721ffd2c8aaef3124f78895e3fc", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_rotateby": [null, [["10", "100", "1000", "10000"]], "3a363526876a2804ba8aa888ffe51737d852a4f374b4afcea48089e448dd31cb", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_split": [null, [["10", "100", "1000", "10000"]], "416f626f3c7231a69b7aeff75fba459fe50c0154712be099617e3bbb6e5916d4", 1732790164004], "ag_methods.AtomGroupMethodsBench.time_subtract": [null, [["10", "100", "1000", "10000"]], "a850d565fa6aecc39128e9d35a85496508288f8b8989d9fdb21f77796d838786", 1732790164005], "ag_methods.AtomGroupMethodsBench.time_symmetric_difference": [null, [["10", "100", "1000", "10000"]], "0f5ae06c5f76555fb6a63e41f85fd32373e10d49a309803a4b06be75e05ec0a9", 1732790164005], "ag_methods.AtomGroupMethodsBench.time_transform": [null, [["10", "100", "1000", "10000"]], "6dc5031197d6b02edba0f8d4bd19cec798be5c5b740547575f7cade39a38b391", 1732790164005], "ag_methods.AtomGroupMethodsBench.time_translate": [null, [["10", "100", "1000", "10000"]], "97a8195e6e8cd22f3b5cfa3a9f162d518b497d64e2cd734e91212b74e9620d3a", 1732790164005], "ag_methods.AtomGroupMethodsBench.time_union": [null, [["10", "100", "1000", "10000"]], "3e19a73408a52eca4f12d1df1f083093bf51de80adc8a78f3448451658ae113b", 1732790164005], "ag_methods.AtomGroupMethodsBench.time_wrap": [null, [["10", "100", "1000", "10000"]], "e17b327697d267cf044412cc544be3b2e309edad29b10d0ab5af64a7b847d269", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_angle": [null, [["10", "100", "1000", "10000"]], "a83a2ce99c0673f57ac3eac16b49a9db026ae64b6fcaa4389bf47eed59124dbb", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_atomcount": [null, [["10", "100", "1000", "10000"]], "d31f8341e31a7bc198133f258c72536b54ec904f97ac4f28a767f9970856818a", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_atoms": [null, [["10", "100", "1000", "10000"]], "6cd2f945901dc324d1dabcb388bc3fe0c3b5977d49056e5d7a7859c40e2c9af8", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_bond": [null, [["10", "100", "1000", "10000"]], "3507b8355b5b01697e086a646c559412d09fde51fc7139f4524f7cb58aa7ae67", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_dihedral": [null, [["10", "100", "1000", "10000"]], "5775f1a2f7666febcc47f94b77702bd75a2a7ccd7c9044265c965dbad779a351", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_forces": [null, [["10", "100", "1000", "10000"]], "0186fc73e76b8e3f8cb39e7e11f7c6e9837d800b2379b14591432ee9e710d69e", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_improper": [null, [["10", "100", "1000", "10000"]], "d7ba217b21841225ff1df0b473d66794db6b2c92c56bbb3cb04c042fb43e967c", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_indices": [null, [["10", "100", "1000", "10000"]], "8a27cd7f019ca3f35aa37d112e72f6b0311c37dee14a33adff3dffd8b6ee2602", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_positions": [null, [["10", "100", "1000", "10000"]], "7f538e5ccf7c68b715cb9ba1f0a85764faa5e09216ba83be3b88804f26504dcd", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_residuecount": [null, [["10", "100", "1000", "10000"]], "6ba8023af1d40da84022b2eba1e494b20eb80d1257fa5beabc2206f8d380b237", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_residues": [null, [["10", "100", "1000", "10000"]], "72655f2bf91db254ada1b26646da826894a223384a4691f99b06b291107b938e", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_segmentcount": [null, [["10", "100", "1000", "10000"]], "ea9ccc59b78a3786c8ed142a014c476162b2d37437c8f93a4b05644dd851aede", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_segments": [null, [["10", "100", "1000", "10000"]], "ec21432839b2caac695337844d8b3feff546e74083cc61d846692523160bcf70", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_ts": [null, [["10", "100", "1000", "10000"]], "0aadba3b29a020c1edbc55253049c8f9dc252759321e51f110ca895d99ce52a6", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_unique": [null, [["10", "100", "1000", "10000"]], "1c2345530d78545ab7011e17420325ec0f2b12a472ade667a7253fd672a06f70", 1732790164005], "ag_methods.AtomGroupAttrsBench.time_velocity": [null, [["10", "100", "1000", "10000"]], "3841e8cfb0518bdc257c0479f3844b8bdf80ee1e2bf7b2245ba4ba95533e2ce8", 1732790164005], "ag_methods.CompoundSplitting.time_center_compounds": [null, [["100", "10000", "1000000"], ["1", "10", "100"], ["True", "False"], ["True", "False"]], "1a2731a96f06d85a503ae24d79262851ff5c7c0755d17baf7819456d54075f17", 1732790164006], "ag_methods.FragmentFinding.time_find_fragments": [null, [["'large_fragment_small_solvents'", "'large_fragment'", "'polymer_chains'"]], "7629f34633e0ba4daad90ab0adc33965e3f05cd82382570a2941d46085851b39", 1732790164006], "ag_methods.FragmentCaching.time_find_cached_fragments": [null, [["'large_fragment_small_solvents'", "'large_fragment'", "'polymer_chains'"]], "e10a712eaf0f8c9a2489bc4f2dbc9677be29528aa3314aa5bcb814b05e4c5cd8", 1732790164006], "ag_methods.FragmentCaching.time_find_fragments": [null, [["'large_fragment_small_solvents'", "'large_fragment'", "'polymer_chains'"]], "9ee4ba9d30022cba05eab57475bff54164b9f4ffc8a37286663ae8befdd78225", 1732790164006], "analysis.distances.DistancesBench.time_between": [null, [["10", "100", "1000", "10000"]], "06923b19f8f155c8ef51227176b95f08c0b87f7f7f81ff6a72eaebe8b2927bca", 1732790164006], "analysis.distances.DistancesBench.time_calc_angles": [null, [["10", "100", "1000", "10000"]], "3bf2d6564e727c2553e682fe2f6290e199915ad8f0ea5bd8d0dc8e6a35c8c193", 1732790164006], "analysis.distances.DistancesBench.time_calc_bonds": [null, [["10", "100", "1000", "10000"]], "c82f8a3b8b73aa472c1b332c89f7225cdc60f0a35fc6f526d818427e0c0f4260", 1732790164006], "analysis.distances.DistancesBench.time_calc_dihedrals": [null, [["10", "100", "1000", "10000"]], "8e267b78a21ada5eaa0968be8444c971d3b72cdb1f245bdc8bdb0a8b41b66c65", 1732790164006], "analysis.distances.DistancesBench.time_contact_matrix": [null, [["10", "100", "1000", "10000"]], "c91c137bba8896a5e5f082a89a5f74a4250cd550276f5c0dd7e67099a3e4ce27", 1732790164006], "analysis.distances.DistancesBench.time_contact_matrix_sparse": [null, [["10", "100", "1000", "10000"]], "90afc393d0d08334fd0a603ceb4c1a30e1d495c974d7fbf3e902b3d87afa19d1", 1732790164006], "analysis.distances.DistancesBench.time_dist": [null, [["10", "100", "1000", "10000"]], "3663b232cc72f4cdece318f342aa8287da2493eca63495991d9421aab0dbb4a9", 1732790164006], "analysis.distances.DistancesBench.time_dist_offsets": [null, [["10", "100", "1000", "10000"]], "87ed1892f89d366f02c57b9aa83c6fa277a3f9bec85750e08ef2ba0c5a385709", 1732790164006], "analysis.distances.DistancesBench.time_distance_array": [null, [["10", "100", "1000", "10000"]], "423bb13d31eacb2b6e5d3f261552b10be8a2e7388ff95d71dc782c0c8731a23b", 1732790164006], "analysis.distances.DistancesBench.time_distance_array_pre_allocated": [null, [["10", "100", "1000", "10000"]], "46dcac9910323321beb5396d4e413bb5975d6fa512b22bf0df6bcd873672d43e", 1732790164006], "analysis.distances.DistancesBench.time_self_distance_array": [null, [["10", "100", "1000", "10000"]], "5c8f51df8cbca15ce193bc4c18e14d5772ad7e53fc9f565cdc096b24308e6f3f", 1732790164006], "analysis.distances.DistancesBench.time_self_distance_array_pre_allocated": [null, [["10", "100", "1000", "10000"]], "216345f414efc996a92de0ab4f74763fe20124827e2a57adf0e9bcc93ea05530", 1732790164006], "analysis.leaflet.LeafletBench.time_leafletfinder": [null, [["7.0", "15.0", "23.0"], ["None", "True", "False"], ["True", "False"]], "2458c4484b875134228107f4bce8daa33aeb344a704e3af71edcbb03b58fc057", 1732790164006], "analysis.leaflet.LeafletOptimizeBench.time_optimize_cutoff": [null, [["None", "True", "False"], ["True", "False"]], "73a3a56d78b0454ad8df949ea3929d5b1281bea8bc6afb57e61589b4d99c688c", 1732790164006], "analysis.psa.PSA_sqnormBench.time_sqnorm": [null, [["2", "3", "4"], ["100", "1000", "10000"], ["None", "0", "1", "-1"]], "5360f9d9650b651e056f22f98fd02bda2307b2f2eabb3fbe7c1c4b0dffe5f70b", 1732790164006], "analysis.psa.PSA_get_msd_matrixBench.time_get_msd_matrix": [null, [["10", "100", "1000"], ["5", "25", "50"]], "9dcdda75f655ab20762a5a9c171d804a3f908f3b76043f3fb66e1c5e471aa2c0", 1732790164006], "analysis.psa.PSA_get_coord_axesBench.time_get_coord_axes": [null, [["10", "100", "1000"], ["5", "25", "50"]], "86cb5086b8445a130e30b1506114ef9279166f177f3b89ad2641253d58117f93", 1732790164006], "analysis.psa.PSA_get_path_metric_funcBench.time_get_path_metric_func": [null, [["'hausdorff'", "'weighted_average_hausdorff'", "'average_hausdorff'", "'hausdorff_neighbors'", "'discrete_frechet'"]], "fc71d48ec5e111b5f38e7d741ab5f63fc3c8615325be6916878225ada0d3e828", 1732790164007], "analysis.psa.PSA_metricBench.time_discrete_frechet": [null, [["10", "100", "200"], ["5", "25", "50"]], "3bb3d861752ef9ed6f77ac94cad9ed2e42c56d8df988a838892b313d1104b7cb", 1732790164007], "analysis.psa.PSA_metricBench.time_hausdorff": [null, [["10", "100", "200"], ["5", "25", "50"]], "e0c90539a3b87665619c0c5923a412b1457f5cf08564b891b2ea25345fc720fc", 1732790164007], "analysis.psa.PSA_metricBench.time_hausdorff_avg": [null, [["10", "100", "200"], ["5", "25", "50"]], "bda335edfdd48be1e40d51ba67bd57127dc22570ed81c79b25c9c34e98073cad", 1732790164007], "analysis.psa.PSA_metricBench.time_hausdorff_neighbors": [null, [["10", "100", "200"], ["5", "25", "50"]], "77321a9a92915cf788b65037e075327c72374c4f6dd8a105749c502756260a7a", 1732790164007], "analysis.psa.PSA_metricBench.time_hausdorff_wavg": [null, [["10", "100", "200"], ["5", "25", "50"]], "162c1711b4953d5045859022df8b1477ad41b166cf80dc31e0b961c87761ed81", 1732790164007], "analysis.rdf.SimpleRdfBench.time_interrdf": [null, [["20", "75", "200"], ["[0, 5]", "[0, 15]", "[0, 20]"], ["1", "100", "1000", "10000"]], "834273d73c592c18978de979c278573fc8d7997972d1e690ed8efbbeadf8ca08", 1732790164007], "analysis.rms.SimpleRmsBench.time_rmsd": [null, [["100", "500", "2000"], ["None", "[1.0, 0.5]"], ["False", "True"], ["False", "True"]], "bda0e78ff13a61dce070b3eddef389263aef31ccdd42ddb3a643bfacf8264b02", 1732790164007], "analysis.rms.RmsdTrajBench.time_RMSD": [null, [["'all'", "'backbone'"], ["None", "'mass'"]], "64836ac01572a5047b1dd99fff0059e19db814e8d869fba0f667e8ce391dab94", 1732790164007], "analysis.rms.RmsfTrajBench.time_RMSF": [null, [["100", "500", "2000"], ["None", "3"], ["None", "'mass'"]], "99e0776f38969e49506709a4f7297c981a8d81c0febde80cbbc90d2f0f163b4c", 1732790164007], "import.ImportBench.time_import": [null, [], "61f437034b6040b9faf8e324049e743318ff56255c98cd868a547bac5c256124", 1732790164007], "selections.SimpleSelectionBench.time_simple_selections": [null, [["'protein'", "'backbone'", "'nucleic'", "'nucleicbackbone'", "'resid 1:10'", "'resnum 1:10'", "'resname LYS'", "'name CA'", "'bynum 0:10'"]], "3d7336e8388a8daf7d76bc3faec4ee662f2ddce17529d2b322ec539be91758c3", 1732790164007], "selections.GeoSelectionBench.time_geometric_selections": [null, [["'around 5.0 resid 1'", "'sphlayer 2.4 6.0 (protein)'", "'sphzone 6.0 (protein)'", "'cylayer 5 10 10 -8 protein'", "'cyzone 15 4 -8 protein'", "'point 5.0 5.0 5.0 3.5'", "'prop z >= 5.0'", "'prop abs z <= 5.0'"], ["True", "False"], ["[False, True]", "[True, False]"]], "3e43b2b234945b3a318c65087db5dda171f737beaec83199d0461b3ea3b0d93e", 1732790164007], "topology.TopologyGuessBench.time_guessbonds": [null, [["10", "100", "1000", "10000"]], "0424f4afbc9a4f382d5d3c936c5b5d57693fa646d37ae661e54dd42bb0e6ee6e", 1732790164007], "topology.BondsBench.time_bonds": [null, [["1000", "10000", "100000", "1000000"]], "53f46341b02a43024f5c677dcdfef05390e63757bfb308dc62104475abb08dc9", 1732790164007], "traj_reader.TrajReaderCreation.time_reads": [null, [["'XTC'", "'TRR'", "'DCD'", "'NCDF'"]], "4b030c7c2af116b5eaaec4c77913ed39dda95d0f355f11be9ee99403dfa71f93", 1732790164007], "traj_reader.TrajReaderIteration.time_strides": [null, [["'XTC'", "'TRR'", "'DCD'", "'NCDF'"]], "d2890f87c636b5336c33c4ede5c97f90f26b52ea890f4514459dee27de3b92fc", 1732790164007]}, "durations": {"<build>": 72.3201220035553}, "version": 2}