Paper-specific code supporting:
Lee, K.H.*, Denovellis, E.L.*, Ly, R., Magland, J., Soules, J., Comrie, A.E., Gramling, D.P., Guidera, J.A., Nevers, R., Adenekan, P., Brozdowski, C., Bray, S., Monroe, E., Bak, J.H., Coulter, M.E., Sun, X., Broyles, E., Shin, D., Chiang, S., Holobetz, C., Tritt, A., Rübel, O., Nguyen, T., Yatsenko, D., Chu, J., Kemere, C., Garcia, S., Buccino, A., Frank, L.M., 2024. Spyglass: a data analysis framework for reproducible and shareable neuroscience research. bioRxiv. 10.1101/2024.01.25.577295.
* Equal contribution
- Install miniconda (or mamba) if it isn't already installed.
- git clone https://github.com/edeno/spyglass-paper.git
- Setup editiable package with dependencies
cd spyglass-paper
conda env create -f environment.yml
conda activate spyglass-paperFor the MS2220180629 data https://doi.org/10.48324/dandi.000059/0.230907.2101, you can download the data from DANDI using the following command:
dandi download DANDI:000059/0.230907.2101
mv sub-MS22_ses-Peter-MS22-180629-110319-concat_desc-processed_behavior+ecephys.nwb spyglass-paper/data/nwb/raw/MS2220180629.nwb/MS2220180629.nwb # rename the file
The j1620210710 data will be available on DANDI soon.