Skip to content

Gene name hyphens get filtered out when using cob.from_table() #66

@MeeshCompBio

Description

@MeeshCompBio

If I have a data matrix that looks like this to serve as input into COB.from_table.

R1M-C2 R2M-C2 R3M-C2 R1T-C2
BDIBD21-3.1G0000700 0.440474 0.255481 0.312441
BDIBD21-3.1G0000800 1.41546 2.19172 2.00877
BDIBD21-3.1G0000900 0.0210054 0 0.0714931
BDIBD21-3.1G0001000 0 0 0

That command converts the gene names to something like BDIBD213.1G000290 before testing membership where the hyphen gets removed. This change ends up filtering out all of the genes since they don't match the RefGen gene names that include the hyphen.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions