Fix list syncronization with partly empty lists #3111
Workflow file for this run
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| name: "CI testing | CPU" | |
| # see: https://help.github.com/en/actions/reference/events-that-trigger-workflows | |
| on: # Trigger the workflow on push or pull request, but only for the master branch | |
| push: | |
| branches: [master, "release/*"] | |
| pull_request: | |
| branches: [master, "release/*"] | |
| types: [opened, reopened, ready_for_review, synchronize] | |
| workflow_dispatch: {} | |
| schedule: | |
| # At the end of every day | |
| - cron: "0 0 * * *" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ github.head_ref }} | |
| cancel-in-progress: ${{ ! (github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/heads/release/')) }} | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| check-diff: | |
| if: github.event.pull_request.draft == false | |
| uses: ./.github/workflows/_focus-diff.yml | |
| pytester: | |
| runs-on: ${{ matrix.os }} | |
| needs: check-diff | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-20.04"] | |
| python-version: ["3.9"] | |
| pytorch-version: | |
| - "1.10.2" | |
| - "1.11.0" | |
| - "1.12.1" | |
| - "1.13.1" | |
| - "2.0.1" | |
| - "2.1.2" | |
| - "2.2.2" | |
| include: | |
| # cover additional python nad PR combinations | |
| - { os: "ubuntu-22.04", python-version: "3.8", pytorch-version: "1.13.1" } | |
| - { os: "ubuntu-22.04", python-version: "3.10", pytorch-version: "2.0.1" } | |
| - { os: "ubuntu-22.04", python-version: "3.10", pytorch-version: "2.2.2" } | |
| - { os: "ubuntu-22.04", python-version: "3.11", pytorch-version: "2.2.2" } | |
| # standard mac machine, not the M1 | |
| - { os: "macOS-12", python-version: "3.8", pytorch-version: "1.13.1" } | |
| - { os: "macOS-12", python-version: "3.10", pytorch-version: "2.0.1" } | |
| - { os: "macOS-12", python-version: "3.11", pytorch-version: "2.2.2" } | |
| # using the ARM based M1 machine | |
| - { os: "macOS-14", python-version: "3.10", pytorch-version: "2.0.1" } | |
| - { os: "macOS-14", python-version: "3.11", pytorch-version: "2.2.2" } | |
| # some windows | |
| - { os: "windows-2022", python-version: "3.8", pytorch-version: "1.13.1" } | |
| - { os: "windows-2022", python-version: "3.10", pytorch-version: "2.0.1" } | |
| - { os: "windows-2022", python-version: "3.11", pytorch-version: "2.2.2" } | |
| env: | |
| PYTORCH_URL: "https://download.pytorch.org/whl/cpu/torch_stable.html" | |
| FREEZE_REQUIREMENTS: ${{ ! (github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/heads/release/')) }} | |
| PYPI_CACHE: "_ci-cache_PyPI" | |
| TOKENIZERS_PARALLELISM: false | |
| TEST_DIRS: ${{ needs.check-diff.outputs.test-dirs }} | |
| # Timeout: https://stackoverflow.com/a/59076067/4521646 | |
| # seems that macOS jobs take much more than orger OS | |
| timeout-minutes: 120 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # GitHub Actions: Run step on specific OS: https://stackoverflow.com/a/57948488/4521646 | |
| - name: Setup macOS | |
| if: ${{ runner.os == 'macOS' }} | |
| run: | | |
| echo 'UNITTEST_TIMEOUT=--timeout=75' >> $GITHUB_ENV | |
| brew install mecab # https://github.com/coqui-ai/TTS/issues/1533#issuecomment-1338662303 | |
| brew install gcc libomp ffmpeg # https://github.com/pytorch/pytorch/issues/20030 | |
| - name: Setup Linux | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| echo 'UNITTEST_TIMEOUT=--timeout=75' >> $GITHUB_ENV | |
| sudo apt update --fix-missing | |
| sudo apt install -y ffmpeg dvipng texlive-latex-extra texlive-fonts-recommended cm-super | |
| - name: Setup Windows | |
| if: ${{ runner.os == 'windows' }} | |
| run: choco install ffmpeg | |
| - name: source cashing | |
| uses: ./.github/actions/pull-caches | |
| with: | |
| requires: ${{ matrix.requires }} | |
| pytorch-version: ${{ matrix.pytorch-version }} | |
| pypi-dir: ${{ env.PYPI_CACHE }} | |
| #- name: Switch to PT test URL | |
| # if: ${{ matrix.pytorch-version == '2.3.0' }} | |
| # run: echo 'PYTORCH_URL=https://download.pytorch.org/whl/test/cpu/torch_test.html' >> $GITHUB_ENV | |
| - name: Install pkg | |
| timeout-minutes: 25 | |
| run: | | |
| pip --version | |
| pip install -e . -U --find-links $PYTORCH_URL -f $PYPI_CACHE | |
| pip install -r requirements/_doctest.txt -U -f $PYPI_CACHE | |
| pip list | |
| - name: DocTests | |
| timeout-minutes: 25 | |
| working-directory: ./src | |
| env: | |
| SKIP_SLOW_DOCTEST: 1 | |
| # NOTE: run coverage on tests does not propagate failure status for Win, https://github.com/nedbat/coveragepy/issues/1003 | |
| run: python -m pytest torchmetrics --reruns 3 --reruns-delay 2 | |
| - name: Install all dependencies | |
| run: | | |
| curl https://raw.githubusercontent.com/Lightning-AI/utilities/main/scripts/adjust-torch-versions.py -o adjust-torch-versions.py | |
| pip install -q cython # needed for installing `pycocotools` in latest config | |
| for fpath in `ls requirements/*.txt`; do | |
| python adjust-torch-versions.py $fpath | |
| done | |
| pip install --requirement requirements/_devel.txt -U \ | |
| --find-links $PYTORCH_URL -f $PYPI_CACHE | |
| pip list | |
| - name: set special vars for PR | |
| if: ${{ github.event_name == 'pull_request' }} | |
| run: | | |
| echo 'ALLOW_SKIP_IF_OUT_OF_MEMORY=1' >> $GITHUB_ENV | |
| echo 'ALLOW_SKIP_IF_BAD_CONNECTION=1' >> $GITHUB_ENV | |
| - name: Sanity check | |
| id: info | |
| run: | | |
| python -c "from torch import __version__ as ver; ver = ver.split('+')[0] ; assert ver == '${{ matrix.pytorch-version }}', ver" | |
| python -c 'import torch ; print("TORCH=" + str(torch.__version__))' >> $GITHUB_OUTPUT | |
| - name: Pull testing data from S3 | |
| working-directory: ./tests | |
| env: | |
| S3_DATA: "https://pl-public-data.s3.amazonaws.com/metrics/data.zip" | |
| run: | | |
| pip install -q "urllib3>1.0" | |
| # wget is simpler but does not work on Windows | |
| python -c "from urllib.request import urlretrieve ; urlretrieve('$S3_DATA', 'data.zip')" | |
| unzip -o data.zip | |
| ls -l _data/* | |
| - name: Export README tests | |
| run: python -m phmdoctest README.md --outfile tests/unittests/test_readme.py | |
| - name: Unittests common | |
| # skip for PR if there is nothing to test, note that outside PR there is default 'unittests' | |
| if: ${{ env.TEST_DIRS != '' }} | |
| working-directory: ./tests | |
| run: | | |
| python -m pytest \ | |
| $TEST_DIRS \ | |
| --cov=torchmetrics \ | |
| --durations=50 \ | |
| --reruns 3 \ | |
| --reruns-delay 1 \ | |
| -m "not DDP" \ | |
| -n auto \ | |
| --dist=load \ | |
| ${{ env.UNITTEST_TIMEOUT }} | |
| - name: Unittests DDP | |
| # skip for PR if there is nothing to test, note that outside PR there is default 'unittests' | |
| if: ${{ env.TEST_DIRS != '' }} | |
| working-directory: ./tests | |
| env: | |
| USE_PYTEST_POOL: "1" | |
| run: | | |
| python -m pytest -v \ | |
| $TEST_DIRS \ | |
| --cov=torchmetrics \ | |
| --durations=50 \ | |
| -m DDP \ | |
| --reruns 3 \ | |
| --reruns-delay 1 \ | |
| ${{ env.UNITTEST_TIMEOUT }} | |
| - name: Statistics | |
| # skip for PR if there is nothing to test, note that outside PR there is default 'unittests' | |
| if: ${{ env.TEST_DIRS != '' }} | |
| working-directory: ./tests | |
| run: | | |
| coverage xml | |
| coverage report | |
| - name: Upload coverage to Codecov | |
| # skip for PR if there is nothing to test, note that outside PR there is default 'unittests' | |
| if: ${{ env.TEST_DIRS != '' }} | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: tests/coverage.xml | |
| flags: cpu,${{ runner.os }},python${{ matrix.python-version }},torch${{ steps.info.outputs.TORCH }} | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| - name: update cashing | |
| if: github.event_name != 'pull_request' | |
| continue-on-error: true | |
| uses: ./.github/actions/push-caches | |
| with: | |
| pypi-dir: ${{ env.PYPI_CACHE }} | |
| testing-guardian: | |
| runs-on: ubuntu-latest | |
| needs: pytester | |
| if: always() | |
| steps: | |
| - run: echo "${{ needs.pytester.result }}" | |
| - name: failing... | |
| if: needs.pytester.result == 'failure' | |
| run: exit 1 | |
| - name: cancelled or skipped... | |
| if: contains(fromJSON('["cancelled", "skipped"]'), needs.pytester.result) | |
| timeout-minutes: 1 | |
| run: sleep 90 |