This package implements kernel tests such as kernel Fisher Discriminant Analysis (kFDA) and Minimum Mean Discrepency (MMD) introduced in [1].
The code for the analysis presented in [1] are available in a dedicated repository here.
The source code for experimental_data and squair scripts are based on the branch publication_genome_biology. The reversion scripts are based on the branch publication_genome_biology_reversion.
See https://github.com/AnthoOzier/ktest_experiment_genome_biology_2024 for more details.
See the dedicated LICENSE.md and AUTHORS.md files.
See python directory.
Latest development version:
pip install ktest@git+https://github.com/LMJL-Alea/ktest@main#subdirectory=python
See the dedicated tutorials folder in the project root directory for notebook tutorials in Python.
See r-pkg directory.
remotes::install_github("LMJL-Alea/ktest", ref = "main", subdir = "r-pkg")
[1] Anthony Ozier-Lafontaine, Camille Fourneaux, Ghislain Durif, Polina Arsenteva, Céline Vallot, Olivier Gandrillon, Sandrine Gonin-Giraud, Bertrand Michel, Franck Picard. Kernel-based testing for single-cell differential analysis. Genome Biol 25, 114 (2024). doi:10.1186/s13059-024-03255-1, hal-04214858