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feat: Implement BestDose#163

Merged
Siel merged 59 commits intomainfrom
bestdose
Nov 5, 2025
Merged

feat: Implement BestDose#163
Siel merged 59 commits intomainfrom
bestdose

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@mhovd
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@mhovd mhovd commented Jul 22, 2025

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github-actions bot commented Aug 11, 2025

🐰 Bencher Report

Branchbestdose
Testbedpmcore-runner
Click to view all benchmark results
BenchmarkLatencyBenchmark Result
seconds (s)
(Result Δ%)
Upper Boundary
seconds (s)
(Limit %)
bimodal_ke_npag📈 view plot
🚷 view threshold
33.84 s
(+48.09%)Baseline: 22.85 s
49.31 s
(68.62%)
bimodal_ke_npod📈 view plot
🚷 view threshold
43.79 s
(+83.72%)Baseline: 23.84 s
70.38 s
(62.22%)
bimodal_ke_postprob📈 view plot
🚷 view threshold
15.17 s
(+82.82%)Baseline: 8.30 s
24.41 s
(62.14%)
🐰 View full continuous benchmarking report in Bencher

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github-actions bot commented Sep 29, 2025

🐰 Bencher Report

Branchbestdose
Testbedrust-loki
Click to view all benchmark results
BenchmarkLatencyBenchmark Result
seconds (s)
(Result Δ%)
Upper Boundary
seconds (s)
(Limit %)
bimodal_ke_npag📈 view plot
🚷 view threshold
42.03 s
(+18.60%)Baseline: 35.44 s
43.61 s
(96.37%)
bimodal_ke_npod📈 view plot
🚷 view threshold
56.08 s
(+20.53%)Baseline: 46.53 s
60.95 s
(92.02%)
bimodal_ke_postprob📈 view plot
🚷 view threshold
19.20 s
(+19.28%)Baseline: 16.10 s
20.82 s
(92.24%)
🐰 View full continuous benchmarking report in Bencher

@Siel
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Siel commented Oct 22, 2025

We might need to merge main again into this branch so the tests pass

mhovd and others added 27 commits October 22, 2025 17:34
Co-Authored-By: Julian Otalvaro <1023006+Siel@users.noreply.github.com>
Co-Authored-By: masyamada <walter.mas.yamada@gmail.com>
Co-Authored-By: Julian Otalvaro <1023006+Siel@users.noreply.github.com>
Co-Authored-By: Julian Otalvaro <1023006+Siel@users.noreply.github.com>
Co-Authored-By: Julian Otalvaro <1023006+Siel@users.noreply.github.com>
Next is updating the cost function to use all predictions
Warning: The new approach is more computationally expensive
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@Siel
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Siel commented Oct 24, 2025

Before merging this branch, it needs more work to support multiple output equations

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github-actions bot commented Oct 24, 2025

🐰 Bencher Report

Branchbestdose
Testbedrust-moan
Click to view all benchmark results
BenchmarkLatencyBenchmark Result
seconds (s)
(Result Δ%)
Upper Boundary
seconds (s)
(Limit %)
bimodal_ke_npag📈 view plot
🚷 view threshold
24.80 s
(-1.98%)Baseline: 25.30 s
26.43 s
(93.82%)
bimodal_ke_npod📈 view plot
🚷 view threshold
10.58 s
(+0.60%)Baseline: 10.52 s
10.76 s
(98.34%)
bimodal_ke_postprob📈 view plot
🚷 view threshold
3.50 s
(+0.37%)Baseline: 3.48 s
3.55 s
(98.44%)
🐰 View full continuous benchmarking report in Bencher

@Siel
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Siel commented Nov 4, 2025

@mhovd All bugs are now fixed. in my opinion this is ready to be merged

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mhovd commented Nov 4, 2025

@mhovd All bugs are now fixed. in my opinion this is ready to be merged

Please have a look at #214, and consider pulling

Siel and others added 13 commits November 4, 2025 10:20
* Documentation

* Make fields of BestDoseProblem private and rename field

* Rename fields

* Change output of result

* Update tests

---------

Co-authored-by: Julian Otalvaro <juliandavid347@gmail.com>
* Clean up result structure

* Remove redundant code

* Remove clone

* Update bestdose.rs

* Use enum for optimization method

* Enum for the status of BestDose
@Siel Siel merged commit afb8399 into main Nov 5, 2025
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@github-actions github-actions bot mentioned this pull request Nov 5, 2025
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2 participants