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Commits on May 8, 2024

• Update

  Kuanhao-Chao

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• Fix KeyError: 'gene_biotype' issue #2

  Kuanhao-Chao

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Commits on May 6, 2024

• Merge branch 'main' of https://github.com/Kuanhao-Chao/LiftOn into main

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• Fix CDS coordinate errors and frame error on the reverse strand

  Kuanhao-Chao

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Commits on Apr 29, 2024

• Update README.md

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• Update README.md

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• Update README.md

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Commits on Apr 25, 2024

• Update README.md

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• Update version to release v1.0.0

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• Update figures on README page to static url

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• Update README.md

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• Update graphics/liftover_illustration.gif

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• Update README.md

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• Update README.md

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• Update all ftp links in the documentation

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• Update docs/source/content/how_to_page.rst page

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• Add documentation page 'evaluation metrics - sequence identity'

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Commits on Apr 24, 2024

• Update 'quickstart.rst' page (adding 'Interpreting outputs on the terminal')

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• Update documentation

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Commits on Apr 23, 2024

• Refactor LiftOn class and variants module

  Kuanhao-Chao

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Commits on Apr 21, 2024

• Update LiftOn evaluation model

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• Update loggings & LiftOn status

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Commits on Apr 20, 2024

• Update gene / transcript type counting

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Commits on Apr 19, 2024

• Refactor code (1) Add annotation db argument, (2) Change segments_overlap_length function (3) lifton/fix_trans_annotation.py -> lifton/protein_maximization.py

  Kuanhao-Chao

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Commits on Apr 17, 2024

• Refactor LiftOn Liftoff & miniprot processing scripts

  Kuanhao-Chao

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• Update feature counting in the stats output

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• 1. Refactor code; 2. Add reference gene & transcript ID reporting

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Commits on Apr 8, 2024

• Refactor lifton/lifton.py & lifton/evaluation.py

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Commits on Mar 14, 2024

• Update lift-over GIF

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Commits on Mar 5, 2024

• Update docs/source/index.rst

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• Update circos plot in docs

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Commits on Mar 4, 2024

• Update figures in docs

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• Upload Liftoff/ & miniprot/ figures

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• Upload figures

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• Update README.md

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