Upload Liftoff/ & miniprot/ figures

Kuanhao-Chao · Mar 4, 2024 · 26bdfdd · 26bdfdd
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commit 26bdfdd
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Showing 41 changed files with 5 additions and 5 deletions.
diff --git a/docs/source/_images/RUN_ALL.sh b/docs/source/_images/RUN_ALL.sh
@@ -8,11 +8,11 @@ do
     # Cp all figures
     echo cp -r /ccb/salz2/kh.chao/LiftOn/results/$i/lifton_output/visualization/* $i/
     cp -r /ccb/salz2/kh.chao/LiftOn/results/$i/lifton_output/visualization/* $i/
-    rm -rf $i/Liftoff/
-    rm -rf $i/miniprot/
-    # rm -rf $i/liftoff_frequency.png
-    # rm -rf $i/lifton_frequency.png
-    # rm -rf $i/miniprot_frequency.png
+    # rm -rf $i/Liftoff/
+    # rm -rf $i/miniprot/
+    rm -rf $i/liftoff_frequency.png
+    rm -rf $i/lifton_frequency.png
+    rm -rf $i/miniprot_frequency.png
 
     # # Cp gene order plot
     # echo cp -r /ccb/salz2/kh.chao/LiftOn/results/$i/liftofftools_output/gene_order_plot.pdf $i/

diff --git a/docs/source/_images/arabadop/Liftoff/parasail_identities.png b/docs/source/_images/arabadop/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/arabadop/liftoff_frequency.png b/docs/source/_images/arabadop/liftoff_frequency.png
diff --git a/docs/source/_images/arabadop/miniprot/parasail_identities.png b/docs/source/_images/arabadop/miniprot/parasail_identities.png
diff --git a/docs/source/_images/arabadop/miniprot_frequency.png b/docs/source/_images/arabadop/miniprot_frequency.png
diff --git a/docs/source/_images/bee/Liftoff/parasail_identities.png b/docs/source/_images/bee/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/bee/liftoff_frequency.png b/docs/source/_images/bee/liftoff_frequency.png
diff --git a/docs/source/_images/bee/miniprot/parasail_identities.png b/docs/source/_images/bee/miniprot/parasail_identities.png
diff --git a/docs/source/_images/bee/miniprot_frequency.png b/docs/source/_images/bee/miniprot_frequency.png
diff --git a/docs/source/_images/drosophila_erecta/Liftoff/parasail_identities.png b/docs/source/_images/drosophila_erecta/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/drosophila_erecta/liftoff_frequency.png b/docs/source/_images/drosophila_erecta/liftoff_frequency.png
diff --git a/docs/source/_images/drosophila_erecta/miniprot/parasail_identities.png b/docs/source/_images/drosophila_erecta/miniprot/parasail_identities.png
diff --git a/docs/source/_images/drosophila_erecta/miniprot_frequency.png b/docs/source/_images/drosophila_erecta/miniprot_frequency.png
diff --git a/docs/source/_images/human_chess/Liftoff/parasail_identities.png b/docs/source/_images/human_chess/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/human_chess/liftoff_frequency.png b/docs/source/_images/human_chess/liftoff_frequency.png
diff --git a/docs/source/_images/human_chess/miniprot/parasail_identities.png b/docs/source/_images/human_chess/miniprot/parasail_identities.png
diff --git a/docs/source/_images/human_chess/miniprot_frequency.png b/docs/source/_images/human_chess/miniprot_frequency.png
diff --git a/docs/source/_images/human_mane/Liftoff/parasail_identities.png b/docs/source/_images/human_mane/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/human_mane/liftoff_frequency.png b/docs/source/_images/human_mane/liftoff_frequency.png
diff --git a/docs/source/_images/human_mane/miniprot/parasail_identities.png b/docs/source/_images/human_mane/miniprot/parasail_identities.png
diff --git a/docs/source/_images/human_mane/miniprot_frequency.png b/docs/source/_images/human_mane/miniprot_frequency.png
diff --git a/docs/source/_images/human_refseq/Liftoff/parasail_identities.png b/docs/source/_images/human_refseq/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/human_refseq/liftoff_frequency.png b/docs/source/_images/human_refseq/liftoff_frequency.png
diff --git a/docs/source/_images/human_refseq/miniprot/parasail_identities.png b/docs/source/_images/human_refseq/miniprot/parasail_identities.png
diff --git a/docs/source/_images/human_refseq/miniprot_frequency.png b/docs/source/_images/human_refseq/miniprot_frequency.png
diff --git a/docs/source/_images/human_to_chimp/Liftoff/parasail_identities.png b/docs/source/_images/human_to_chimp/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/human_to_chimp/liftoff_frequency.png b/docs/source/_images/human_to_chimp/liftoff_frequency.png
diff --git a/docs/source/_images/human_to_chimp/miniprot/parasail_identities.png b/docs/source/_images/human_to_chimp/miniprot/parasail_identities.png
diff --git a/docs/source/_images/human_to_chimp/miniprot_frequency.png b/docs/source/_images/human_to_chimp/miniprot_frequency.png
diff --git a/docs/source/_images/mouse/Liftoff/parasail_identities.png b/docs/source/_images/mouse/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/mouse/liftoff_frequency.png b/docs/source/_images/mouse/liftoff_frequency.png
diff --git a/docs/source/_images/mouse/miniprot/parasail_identities.png b/docs/source/_images/mouse/miniprot/parasail_identities.png
diff --git a/docs/source/_images/mouse/miniprot_frequency.png b/docs/source/_images/mouse/miniprot_frequency.png
diff --git a/docs/source/_images/mouse_to_rat/Liftoff/parasail_identities.png b/docs/source/_images/mouse_to_rat/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/mouse_to_rat/liftoff_frequency.png b/docs/source/_images/mouse_to_rat/liftoff_frequency.png
diff --git a/docs/source/_images/mouse_to_rat/miniprot/parasail_identities.png b/docs/source/_images/mouse_to_rat/miniprot/parasail_identities.png
diff --git a/docs/source/_images/mouse_to_rat/miniprot_frequency.png b/docs/source/_images/mouse_to_rat/miniprot_frequency.png
diff --git a/docs/source/_images/rice/Liftoff/parasail_identities.png b/docs/source/_images/rice/Liftoff/parasail_identities.png
diff --git a/docs/source/_images/rice/liftoff_frequency.png b/docs/source/_images/rice/liftoff_frequency.png
diff --git a/docs/source/_images/rice/miniprot/parasail_identities.png b/docs/source/_images/rice/miniprot/parasail_identities.png
diff --git a/docs/source/_images/rice/miniprot_frequency.png b/docs/source/_images/rice/miniprot_frequency.png