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Kuanhao-Chao authored May 17, 2024
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<h2>Cite us<a class="headerlink" href="#cite-us" title="Permalink to this heading">#</a></h2>
<p>Kua-Hao Chao, Jakob M. Heinz, Celine Hoh, Alan Mao, Alaina Shumate, Mihaela Pertea, and Steven L. Salzberg. <i>"Combining DNA and protein alignments to improve genome annotation with LiftOn."</i> <b>bioRxiv</b> <b>2024.05.16.593026</b>, doi: [https://doi.org/10.1101/2024.05.16.593026](https://doi.org/10.1101/2024.05.16.593026), 2024.
<a href="https://doi.org/10.1093/bioinformatics/btaa1016" target="_blank"> <svg xmlns="http://www.w3.org/2000/svg" aria-hidden="true" x="0px" y="0px" viewBox="0 0 100 100" width="15" height="15" class="icon outbound"><path fill="currentColor" d="M18.8,85.1h56l0,0c2.2,0,4-1.8,4-4v-32h-8v28h-48v-48h28v-8h-32l0,0c-2.2,0-4,1.8-4,4v56C14.8,83.3,16.6,85.1,18.8,85.1z"></path> <polygon fill="currentColor" points="45.7,48.7 51.3,54.3 77.2,28.5 77.2,37.2 85.2,37.2 85.2,14.9 62.8,14.9 62.8,22.9 71.5,22.9"></polygon></svg> </a> </p>

<p>Alaina Shumate, and Steven L. Salzberg. <i>"Liftoff: accurate mapping of gene annotations."</i> <b>Bioinformatics</b> 37.12 (2021): 1639-1643.

<a href="https://doi.org/10.1093/bioinformatics/btaa1016" target="_blank"> <svg xmlns="http://www.w3.org/2000/svg" aria-hidden="true" x="0px" y="0px" viewBox="0 0 100 100" width="15" height="15" class="icon outbound"><path fill="currentColor" d="M18.8,85.1h56l0,0c2.2,0,4-1.8,4-4v-32h-8v28h-48v-48h28v-8h-32l0,0c-2.2,0-4,1.8-4,4v56C14.8,83.3,16.6,85.1,18.8,85.1z"></path> <polygon fill="currentColor" points="45.7,48.7 51.3,54.3 77.2,28.5 77.2,37.2 85.2,37.2 85.2,14.9 62.8,14.9 62.8,22.9 71.5,22.9"></polygon></svg>
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<section id="user-support" class="">
<h2>User support<a class="headerlink" href="#user-support" title="Permalink to this heading">#</a></h2>
<p>Please go through the <a class="reference internal" href="#table-of-contents"><span class="std std-ref">documentation</span></a> below first. If you have questions about using the package, a bug report, or a feature request, please use the GitHub issue tracker here:</p>
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## <a name="citation"></a>Citation<a class="headerlink" href="#citation" title="Permalink to this heading">#</a>
<section id="cite-us" class="">
<h2>Cite us<a class="headerlink" href="#cite-us" title="Permalink to this heading">#</a></h2>
<p>Kua-Hao Chao, Jakob M. Heinz, Celine Hoh, Alan Mao, Alaina Shumate, Mihaela Pertea, and Steven L. Salzberg. <i>"Combining DNA and protein alignments to improve genome annotation with LiftOn."</i> <b>bioRxiv</b>, doi: https://doi.org/10.1101/2024.05.16.593026, 2024.
<a href="https://doi.org/10.1093/bioinformatics/btaa1016" target="_blank"> <svg xmlns="http://www.w3.org/2000/svg" aria-hidden="true" x="0px" y="0px" viewBox="0 0 100 100" width="15" height="15" class="icon outbound"><path fill="currentColor" d="M18.8,85.1h56l0,0c2.2,0,4-1.8,4-4v-32h-8v28h-48v-48h28v-8h-32l0,0c-2.2,0-4,1.8-4,4v56C14.8,83.3,16.6,85.1,18.8,85.1z"></path> <polygon fill="currentColor" points="45.7,48.7 51.3,54.3 77.2,28.5 77.2,37.2 85.2,37.2 85.2,14.9 62.8,14.9 62.8,22.9 71.5,22.9"></polygon></svg> </a> </p>

<p>Alaina Shumate, and Steven L. Salzberg. <i>"Liftoff: accurate mapping of gene annotations."</i> <b>Bioinformatics</b> 37.12 (2021): 1639-1643.

Kuan-Hao Chao*, Mihaela Pertea, Steven L Salzberg*, "LiftOn: a tool to improve annotations for protein-coding genes during the lift-over process.", <i>bioRxiv</i> <b>2023.07.27.550754</b>, doi: [https://doi.org/10.1101/2023.07.27.550754](https://doi.org/10.1101/2023.07.27.550754), 2023
<a href="https://doi.org/10.1093/bioinformatics/btaa1016" target="_blank"> <svg xmlns="http://www.w3.org/2000/svg" aria-hidden="true" x="0px" y="0px" viewBox="0 0 100 100" width="15" height="15" class="icon outbound"><path fill="currentColor" d="M18.8,85.1h56l0,0c2.2,0,4-1.8,4-4v-32h-8v28h-48v-48h28v-8h-32l0,0c-2.2,0-4,1.8-4,4v56C14.8,83.3,16.6,85.1,18.8,85.1z"></path> <polygon fill="currentColor" points="45.7,48.7 51.3,54.3 77.2,28.5 77.2,37.2 85.2,37.2 85.2,14.9 62.8,14.9 62.8,22.9 71.5,22.9"></polygon></svg>
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