attempt to use system ROOT #1
Workflow file for this run
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| name: native | ||
| on: | ||
| push: | ||
| branches: [master] | ||
| paths-ignore: | ||
| - 'docker/Dockerfile' | ||
| - 'docker/*yml' | ||
| - '**.md' | ||
| - 'VirtualBox/**' | ||
| - '.github/workflows/*docker*' | ||
| - 'CITATION.cff' | ||
| - '.mailmap' | ||
| - 'NOTICE.txt' | ||
| - 'LICENSE.txt' | ||
| pull_request: | ||
| branches: [master] | ||
| paths-ignore: | ||
| - 'docker/Dockerfile' | ||
| - 'docker/*yml' | ||
| - '**.md' | ||
| - 'VirtualBox/**' | ||
| - '.github/workflows/*docker*' | ||
| - 'CITATION.cff' | ||
| - '.mailmap' | ||
| - 'NOTICE.txt' | ||
| - 'LICENSE.txt' | ||
| workflow_dispatch: | ||
| inputs: | ||
| tmate: | ||
| description: Debug with tmate ssh session | ||
| type: boolean | ||
| default: false | ||
| required: true | ||
| jobs: | ||
| build-test: | ||
| runs-on: ${{ matrix.os }} | ||
| defaults: {run: {shell: 'bash -el {0}'}} | ||
| env: | ||
| COMPILER: gcc | ||
| BUILD_TYPE: Release | ||
| strategy: | ||
| matrix: | ||
| include: | ||
| - os: ubuntu-latest | ||
| compiler_version: 9 | ||
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON" | ||
| DEVEL_BUILD: "OFF" | ||
| - os: ubuntu-latest | ||
| compiler_version: 9 | ||
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=OFF -DUSE_SYSTEM_HDF5=OFF -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=OFF" | ||
| DEVEL_BUILD: "OFF" | ||
| #- os: ubuntu-latest | ||
| # compiler_version: 9 | ||
| # EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=OFF -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON" | ||
| # DEVEL_BUILD: "OFF" | ||
| - os: ubuntu-latest | ||
| compiler_version: 9 | ||
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=ON -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_SYSTEM_GTest=OFF" | ||
| DEVEL_BUILD: "OFF" | ||
| - os: ubuntu-latest | ||
| compiler_version: 11 | ||
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON -DUSE_SYSTEM_ROOT=ON" | ||
| DEVEL_BUILD: "ON" | ||
| - os: ubuntu-latest | ||
| compiler_version: 11 | ||
| EXTRA_BUILD_FLAGS: "-DUSE_ITK=ON -DBUILD_CIL=ON -DUSE_SYSTEM_ACE=ON -DUSE_SYSTEM_Armadillo=OFF -DUSE_SYSTEM_Boost=ON -DUSE_SYSTEM_FFTW3=ON -DUSE_SYSTEM_HDF5=ON -DBUILD_siemens_to_ismrmrd=ON -DUSE_SYSTEM_SWIG=ON -DUSE_ROOT:BOOL=ON -DUSE_SYSTEM_ROOT=ON" | ||
| DEVEL_BUILD: "OFF" | ||
| fail-fast: false # don't terminate matrix if one job fails | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - if: contains(matrix.os, fromJSON('["ubuntu","macos"]')) | ||
| name: increase disk space | ||
| run: sudo .github/workflows/GHA_increase_disk_space.sh | ||
| - id: deps | ||
| name: install dependencies | ||
| working-directory: docker | ||
| run: | | ||
| sudo ./raw-ubuntu.sh | ||
| sudo ./build_system-ubuntu.sh | ||
| sudo ./build_essential-ubuntu.sh | ||
| sudo ./build_gadgetron-ubuntu.sh | ||
| sudo ./build_python-ubuntu.sh | ||
| echo "python-version=$(python3 --version | awk '{print $2}')" >> $GITHUB_OUTPUT | ||
| - if: contains(matrix.EXTRA_BUILD_FLAGS, fromJSON('USE_SYSTEM_ROOT=ON')) | ||
| # Install ROOT (warning: currently only valid on Ubuntu) | ||
| ROOT_file=root_v6.28.12.Linux-ubuntu20-x86_64-gcc9.4.tar.gz | ||
| wget https://root.cern/download/"$ROOT_file" | ||
| tar -xzvf "$ROOT_file" | ||
| rm "$ROOT_file" | ||
| source root/bin/thisroot.sh | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: '${{ steps.deps.outputs.python-version }}' | ||
| cache: pip | ||
| - name: pip install | ||
| working-directory: docker | ||
| run: PYTHON_EXECUTABLE=python3 PYTHON_INSTALL_DIR="$HOME/virtualenv" ./user_python-ubuntu.sh | ||
| - uses: hendrikmuhs/ccache-action@v1 | ||
| with: | ||
| key: ${{ matrix.os }}-${{ env.COMPILER }}-${{ matrix.compiler_version }}-${{ env.BUILD_TYPE }}-${{ github.ref_name }}-${{ github.run_id }} | ||
| restore-keys: | | ||
| ${{ matrix.os }}-${{ env.COMPILER }}-${{ matrix.compiler_version }}-${{ env.BUILD_TYPE }}-${{ github.ref_name }} | ||
| ${{ matrix.os }}-${{ env.COMPILER }}-${{ matrix.compiler_version }}-${{ env.BUILD_TYPE }} | ||
| append-timestamp: false | ||
| - name: export CC CXX | ||
| run: | | ||
| set -ex | ||
| if test '${{ env.COMPILER }}' = clang; then | ||
| CC=clang | ||
| CXX=clang++ | ||
| elif test '${{ env.COMPILER }}' = gcc; then | ||
| CC=gcc | ||
| CXX=g++ | ||
| fi | ||
| if test -n '${{ matrix.compiler_version }}'; then | ||
| CC=${CC}-${{ matrix.compiler_version }} | ||
| CXX=${CXX}-${{ matrix.compiler_version }} | ||
| sudo apt install -yq ${CXX} ${CC} | ||
| fi | ||
| # make available to jobs below | ||
| echo "CC=$CC" >> $GITHUB_ENV | ||
| echo "CXX=$CXX" >> $GITHUB_ENV | ||
| - name: cmake -S . | ||
| env: | ||
| EXTRA_BUILD_FLAGS: ${{ matrix.EXTRA_BUILD_FLAGS }} | ||
| CMAKE_BUILD_TYPE: ${{ env.BUILD_TYPE }} | ||
| DEVEL_BUILD: "-DDEVEL_BUILD=${{ matrix.DEVEL_BUILD }}" | ||
| run: | | ||
| set -ex | ||
| export PATH="/usr/lib/ccache:/usr/local/opt/ccache/libexec:$PATH" | ||
| export superbuild=`pwd` | ||
| export BUILD_FLAGS="-DCMAKE_INSTALL_PREFIX=~/install -DPYVER=3 -DUSE_SYSTEM_RocksDB=OFF -DBUILD_TESTING_Gadgetron:BOOL=ON" | ||
| source ~/virtualenv/bin/activate | ||
| cmake -S ${GITHUB_WORKSPACE} -B ./build ${BUILD_FLAGS} ${EXTRA_BUILD_FLAGS} ${DEVEL_BUILD}; | ||
| - name: cmake --build | ||
| run: | | ||
| source ~/virtualenv/bin/activate | ||
| cmake --build ./build -j 2 | ||
| # tmate ssh debugging | ||
| - if: github.event_name == 'workflow_dispatch' && github.event.inputs.tmate == 'true' | ||
| uses: mxschmitt/action-tmate@v3 | ||
| timeout-minutes: 15 | ||
| - if: failure() | ||
| name: Upload build log files for debugging | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: build_log_files-${{ matrix.os }}-${{ env.COMPILER }}${{ matrix.compiler_version }}-${{ env.BUILD_TYPE }}-DEVEL=${{ matrix.DEVEL_BUILD }} | ||
| path: ${{ github.workspace }}/build/**/*.log | ||
| retention-days: 7 | ||
| - name: ctest | ||
| run: ./docker/ctest_sirf.sh | ||
