Fix cross module resolution local links (#3425)

Fixes #2272. There is a situation where 2 (or more) gradle modules have the same package and dokka doesn’t know where to link.
E.g.
The class com.example.classA is in moduleA
and com.example.classB is in moduleB
moduleC depends on moduleA and moduleB.
In moduleC: there is a link [com.example.classB]. Having only package-list, dokka doesn’t know where to link, since the package com.example is in both modules.

This is short-term and temporary solution of #3368 to cover a case of links between only local modules in a project.
It is based on #2901 from @EddieRingle. It generates an external link depending on a check if the local link exists. The check works only when the number of possible resolved links are more than one.

* all-modules-page: Validate cross-module links during resolution

The existing behavior was just taking the first module that includes the
package name of a given reference, so this resulted in broken links when
a package is split across multiple modules.

This change checks to ensure the resolved file exists before choosing it
as the target for the resolved link.

Signed-off-by: Eddie Ringle <eddie@ringle.io>

* Check links only if resolved links has more than one link

* Add integration test

* Refactor

* Add comment

---------

Signed-off-by: Eddie Ringle <eddie@ringle.io>
Co-authored-by: Eddie Ringle <eddie@ringle.io>
(cherry picked from commit 6904571)

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/build.gradle.kts

@@ -0,0 +1,5 @@
+/*
+ * Copyright 2014-2023 JetBrains s.r.o. Use of this source code is governed by the Apache 2.0 license.
+ */
+
+apply(from = "../template.root.gradle.kts")

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/gradle.properties

@@ -0,0 +1,5 @@
+#
+# Copyright 2014-2023 JetBrains s.r.o. Use of this source code is governed by the Apache 2.0 license.
+#
+
+dokka_it_kotlin_version=1.9.20

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/gradle/wrapper/gradle-wrapper.properties

@@ -0,0 +1,9 @@
+#
+# Copyright 2014-2023 JetBrains s.r.o. Use of this source code is governed by the Apache 2.0 license.
+#
+
+distributionBase=GRADLE_USER_HOME
+distributionPath=wrapper/dists
+distributionUrl=https\://services.gradle.org/distributions/gradle-6.9.2-bin.zip
+zipStoreBase=GRADLE_USER_HOME
+zipStorePath=wrapper/dists

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/gradlew

@@ -0,0 +1,183 @@
+#!/usr/bin/env sh
+
+#
+# Copyright 2015 the original author or authors.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      https://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+##############################################################################
+##
+##  Gradle start up script for UN*X
+##
+##############################################################################
+
+# Attempt to set APP_HOME
+# Resolve links: $0 may be a link
+PRG="$0"
+# Need this for relative symlinks.
+while [ -h "$PRG" ] ; do
+    ls=`ls -ld "$PRG"`
+    link=`expr "$ls" : '.*-> \(.*\)$'`
+    if expr "$link" : '/.*' > /dev/null; then
+        PRG="$link"
+    else
+        PRG=`dirname "$PRG"`"/$link"
+    fi
+done
+SAVED="`pwd`"
+cd "`dirname \"$PRG\"`/" >/dev/null
+APP_HOME="`pwd -P`"
+cd "$SAVED" >/dev/null
+
+APP_NAME="Gradle"
+APP_BASE_NAME=`basename "$0"`
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+
+# Use the maximum available, or set MAX_FD != -1 to use that value.
+MAX_FD="maximum"
+
+warn () {
+    echo "$*"
+}
+
+die () {
+    echo
+    echo "$*"
+    echo
+    exit 1
+}
+
+# OS specific support (must be 'true' or 'false').
+cygwin=false
+msys=false
+darwin=false
+nonstop=false
+case "`uname`" in
+  CYGWIN* )
+    cygwin=true
+    ;;
+  Darwin* )
+    darwin=true
+    ;;
+  MINGW* )
+    msys=true
+    ;;
+  NONSTOP* )
+    nonstop=true
+    ;;
+esac
+
+CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
+
+# Determine the Java command to use to start the JVM.
+if [ -n "$JAVA_HOME" ] ; then
+    if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
+        # IBM's JDK on AIX uses strange locations for the executables
+        JAVACMD="$JAVA_HOME/jre/sh/java"
+    else
+        JAVACMD="$JAVA_HOME/bin/java"
+    fi
+    if [ ! -x "$JAVACMD" ] ; then
+        die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+    fi
+else
+    JAVACMD="java"
+    which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+fi
+
+# Increase the maximum file descriptors if we can.
+if [ "$cygwin" = "false" -a "$darwin" = "false" -a "$nonstop" = "false" ] ; then
+    MAX_FD_LIMIT=`ulimit -H -n`
+    if [ $? -eq 0 ] ; then
+        if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then
+            MAX_FD="$MAX_FD_LIMIT"
+        fi
+        ulimit -n $MAX_FD
+        if [ $? -ne 0 ] ; then
+            warn "Could not set maximum file descriptor limit: $MAX_FD"
+        fi
+    else
+        warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT"
+    fi
+fi
+
+# For Darwin, add options to specify how the application appears in the dock
+if $darwin; then
+    GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
+fi
+
+# For Cygwin or MSYS, switch paths to Windows format before running java
+if [ "$cygwin" = "true" -o "$msys" = "true" ] ; then
+    APP_HOME=`cygpath --path --mixed "$APP_HOME"`
+    CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
+    JAVACMD=`cygpath --unix "$JAVACMD"`
+
+    # We build the pattern for arguments to be converted via cygpath
+    ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`
+    SEP=""
+    for dir in $ROOTDIRSRAW ; do
+        ROOTDIRS="$ROOTDIRS$SEP$dir"
+        SEP="|"
+    done
+    OURCYGPATTERN="(^($ROOTDIRS))"
+    # Add a user-defined pattern to the cygpath arguments
+    if [ "$GRADLE_CYGPATTERN" != "" ] ; then
+        OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)"
+    fi
+    # Now convert the arguments - kludge to limit ourselves to /bin/sh
+    i=0
+    for arg in "$@" ; do
+        CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
+        CHECK2=`echo "$arg"|egrep -c "^-"`                                 ### Determine if an option
+
+        if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then                    ### Added a condition
+            eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
+        else
+            eval `echo args$i`="\"$arg\""
+        fi
+        i=`expr $i + 1`
+    done
+    case $i in
+        0) set -- ;;
+        1) set -- "$args0" ;;
+        2) set -- "$args0" "$args1" ;;
+        3) set -- "$args0" "$args1" "$args2" ;;
+        4) set -- "$args0" "$args1" "$args2" "$args3" ;;
+        5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
+        6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
+        7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
+        8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
+        9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
+    esac
+fi
+
+# Escape application args
+save () {
+    for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done
+    echo " "
+}
+APP_ARGS=`save "$@"`
+
+# Collect all arguments for the java command, following the shell quoting and substitution rules
+eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS"
+
+exec "$JAVACMD" "$@"

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/gradlew.bat

@@ -0,0 +1,100 @@
+@rem
+@rem Copyright 2015 the original author or authors.
+@rem
+@rem Licensed under the Apache License, Version 2.0 (the "License");
+@rem you may not use this file except in compliance with the License.
+@rem You may obtain a copy of the License at
+@rem
+@rem      https://www.apache.org/licenses/LICENSE-2.0
+@rem
+@rem Unless required by applicable law or agreed to in writing, software
+@rem distributed under the License is distributed on an "AS IS" BASIS,
+@rem WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+@rem See the License for the specific language governing permissions and
+@rem limitations under the License.
+@rem
+
+@if "%DEBUG%" == "" @echo off
+@rem ##########################################################################
+@rem
+@rem  Gradle startup script for Windows
+@rem
+@rem ##########################################################################
+
+@rem Set local scope for the variables with windows NT shell
+if "%OS%"=="Windows_NT" setlocal
+
+set DIRNAME=%~dp0
+if "%DIRNAME%" == "" set DIRNAME=.
+set APP_BASE_NAME=%~n0
+set APP_HOME=%DIRNAME%
+
+@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+set DEFAULT_JVM_OPTS="-Xmx64m" "-Xms64m"
+
+@rem Find java.exe
+if defined JAVA_HOME goto findJavaFromJavaHome
+
+set JAVA_EXE=java.exe
+%JAVA_EXE% -version >NUL 2>&1
+if "%ERRORLEVEL%" == "0" goto init
+
+echo.
+echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+echo.
+echo Please set the JAVA_HOME variable in your environment to match the
+echo location of your Java installation.
+
+goto fail
+
+:findJavaFromJavaHome
+set JAVA_HOME=%JAVA_HOME:"=%
+set JAVA_EXE=%JAVA_HOME%/bin/java.exe
+
+if exist "%JAVA_EXE%" goto init
+
+echo.
+echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
+echo.
+echo Please set the JAVA_HOME variable in your environment to match the
+echo location of your Java installation.
+
+goto fail
+
+:init
+@rem Get command-line arguments, handling Windows variants
+
+if not "%OS%" == "Windows_NT" goto win9xME_args
+
+:win9xME_args
+@rem Slurp the command line arguments.
+set CMD_LINE_ARGS=
+set _SKIP=2
+
+:win9xME_args_slurp
+if "x%~1" == "x" goto execute
+
+set CMD_LINE_ARGS=%*
+
+:execute
+@rem Setup the command line
+
+set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
+
+@rem Execute Gradle
+"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS%
+
+:end
+@rem End local scope for the variables with windows NT shell
+if "%ERRORLEVEL%"=="0" goto mainEnd
+
+:fail
+rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of
+rem the _cmd.exe /c_ return code!
+if  not "" == "%GRADLE_EXIT_CONSOLE%" exit 1
+exit /b 1
+
+:mainEnd
+if "%OS%"=="Windows_NT" endlocal
+
+:omega

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/moduleA/build.gradle.kts

@@ -0,0 +1,20 @@
+/*
+ * Copyright 2014-2023 JetBrains s.r.o. Use of this source code is governed by the Apache 2.0 license.
+ */
+
+plugins {
+    // TODO: File bug report for gradle: :moduleA:moduleB:dokkaHtml is missing kotlin gradle plugin from
+    //  the runtime classpath during execution without this plugin in the parent project
+    kotlin("jvm")
+    id("org.jetbrains.dokka")
+}
+
+allprojects {
+    tasks.withType<org.jetbrains.dokka.gradle.AbstractDokkaTask> {
+        pluginsMapConfiguration.set(
+            mapOf(
+                "org.jetbrains.dokka.base.DokkaBase" to """{ "homepageLink" : "https://github.com/Kotlin/dokka/tree/master/dokka-integration-tests/gradle/projects/it-multimodule-0/" }"""
+            )
+        )
+    }
+}

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/moduleA/moduleB/Module.md

@@ -0,0 +1,6 @@
+# Module !Module B!
+Here is some description for Module B
+
+Module B: Second paragraph
+# Module moduleB
+§IGNORED$This documentation shall be ignored, because wrong module name§IGNORED$

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/moduleA/moduleB/build.gradle.kts

@@ -0,0 +1,17 @@
+/*
+ * Copyright 2014-2023 JetBrains s.r.o. Use of this source code is governed by the Apache 2.0 license.
+ */
+
+import org.jetbrains.dokka.gradle.DokkaTask
+
+plugins {
+    kotlin("jvm")
+    id("org.jetbrains.dokka")
+}
+
+tasks.withType<DokkaTask>().configureEach {
+    moduleName.set("!Module B!")
+    dokkaSourceSets.configureEach {
+        includes.from("Module.md")
+    }
+}

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/moduleA/moduleB/src/main/kotlin/org/jetbrains/dokka/it/ModuleB.kt

@@ -0,0 +1,6 @@
+package org.jetbrains.dokka.it
+
+@Suppress("unused")
+class ModuleB {
+    fun undocumentedPublicFunction() {}
+}

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/moduleA/moduleC/Module.md

@@ -0,0 +1,2 @@
+# Module moduleC
+Here is some description for module C

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/moduleA/moduleC/build.gradle.kts

@@ -0,0 +1,16 @@
+/*
+ * Copyright 2014-2023 JetBrains s.r.o. Use of this source code is governed by the Apache 2.0 license.
+ */
+
+import org.jetbrains.dokka.gradle.DokkaTask
+
+plugins {
+    kotlin("jvm")
+    id("org.jetbrains.dokka")
+}
+
+tasks.withType<DokkaTask>().configureEach {
+    dokkaSourceSets.configureEach {
+        includes.from("Module.md")
+    }
+}

dokka-integration-tests/gradle/projects/it-multimodule-inter-module-links/moduleA/moduleC/src/main/kotlin/org/jetbrains/dokka/it/ModuleC.kt

@@ -0,0 +1,6 @@
+package org.jetbrains.dokka.it
+
+@Suppress("unused")
+class ModuleC {
+    fun undocumentedPublicFunction() {}
+}