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Installation

• Option 1. Use conda - one-command for GetOrganelle & all required dependencies.
• Option 2. Using the setup.py
• Option 3. In situ configuration - for developers
• Updating GetOrganelle
• Dependencies

Initialization

• Option 1. Initialization from Github - recommended, one-command
• Option 2. Initialization using local files

Examples

• Example 1 - a one-minute testing dataset.
  • Quickstart
  • Running log
  • Output
• Example 2 - the same testing dataset with a user-defined seed.
  • Quickstart
  • Running log
  • Output
• Example 3 - Plastome assembly using a real dataset.
• Example 4 - Animal mitogenome assembly using a real dataset.
• Example 5 - Fungal mitogenome assembly using a real dataset.

FAQ

• General
• Input
• Output