Update database with even more structures

helper_files/Exclude_files/Template_DB_excluded.csv

@@ -342,7 +342,7 @@ pdb_code,MHC,peptide,peptide_length,Major_anchors,Secondary_anchors
 5C0G.pdb,HLA-A*02:01,YLGGPDFPTI,10,"2,10","10,2"
 5C0I.pdb,HLA-A*02:01,RQFGPDFPTI,10,"2,10","10,2"
 5C0J.pdb,HLA-A*02:01,RQFGPDWIVA,10,"2,10","10,2"
-5CNZ.pdb,Onmy-UBA*18:01,FANFCLMMI,9,"2,9","2,9"
+5H5Z.pdb,Onmy-UBA*18:01,FANFCLMMI,9,"2,9","2,9"
 5D9S.pdb,HLA-A*02:01,FVLELEPEWTV,11,"2,11","11,2"
 5DDH.pdb,HLA-A*02:01,FVLELEPEWTVK,12,"2,11","11,2"
 5DEG.pdb,HLA-B*27:06,RRKWRRWHL,9,"2,9","2,9"
@@ -543,3 +543,29 @@ pdb_code,MHC,peptide,peptide_length,Major_anchors,Secondary_anchors
 7MKB.pdb,HLA-A*02:01,YLQPRTFLL,9,"2,9","2,3,9"
 7N1B.pdb,HLA-A*02:01,RLQSLQTYV,9,"2,9","2,9"
 7P3E.pdb,HLA-A*02:01,YLQLRTFLL,9,"2,9","2,3,9"
+3FT3.pdb,HLA-A*02:01,VLHDDLLEA,9,"2,9","9,1,2,6"
+6APN.pdb,HLA-A*02:01,LLMGTLGIVGGG,12,"2,9","9,12,2,6"
+6E1I.pdb,HLA-A*02:01,YMLDLQPETGGG,12,"2,9","12,2,9"
+6JQ2.pdb,H2-Kb,SIIVFNLV,8,"2,8","5,1,2,8"
+6KX9.pdb,Gaga-BF2*015:01:01,RRALREGY,8,"2,8","2,8"
+6LUP.pdb,Gici-UAA*01,FANFFIRGL,9,"2,9","2,9"
+6M24.pdb,RLA-A*01,ALMPGQFFV,9,"2,9","9,1,2"
+6M2J.pdb,RLA-A*01,TLIDLTELI,9,"2,9","2,9"
+6M2K.pdb,RLA-A*01,FVPFNSPNI,9,"2,9","2,9"
+7CIQ.pdb,HLA-B*27:05,RRFSRSPIRR,10,"2,10","2,10"
+7CJQ.pdb,DLA-88*001:04,RTISYTYPF,9,"2,9","2,9"
+7DC6.pdb,Aime-128,NGYNFFSTF,9,"2,9","9,5,1,2,3"
+7EM9.pdb,SLA-1*01:01,SLDEYSSDV,9,"2,9","9,1,2,3"
+7EMA.pdb,SLA-1*01:01,YSSDVTTLV,9,"2,9","2,9"
+7EMB.pdb,SLA-1*01:01,AAAIEEEDI,9,"2,9","9,5,1,2"
+7EMC.pdb,SLA-1*01:01,ATEIRELLV,9,"2,9","9,1,2,6,3"
+7EMD.pdb,SLA-1*01:01,YGDFFHDMV,9,"2,9","9,7,2,3"
+7L1B.pdb,HLA-A*03:01,AHHGGWTTK,9,"2,9","9,1,2"
+7MLE.pdb,HLA-A*03:01,VVRPSVASK,9,"2,9","9,1,2"
+7N9J.pdb,H2-Db,YGFRNVVHI,9,"2,9","2,9,5"
+7R7Y.pdb,HLA-B*57:01,QATQEVKNW,9,"2,9","2,9"
+7S8Q.pdb,HLA-A*11:01,KTNGNAFIGK,10,"2,10","1,2,10"
+7S8R.pdb,HLA-A*11:01,SALEWIKNK,9,"2,9","9,1,2"
+7S8S.pdb,HLA-A*11:01,RVLVNGTFLK,10,"2,10","7,1,2,10"
+7U21.pdb,HLA-A*02:01,AVGSYVYSV,9,"2,9","9,1,2,6"
+7WJ2.pdb,HLA-C*14:02,LYNTVATL,8,"2,8","4,1,2,8"

helper_files/Exclude_files/a_chain_sequences.fasta

@@ -684,7 +684,7 @@ GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
 MGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
 >5C0J.pdb
 MGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
->5CNZ.pdb
+>5H5Z.pdb
 GTHSLKYVYTGVSRGIDFPEFTAVGMVDDGQFMYFDSNSMKAVPKTEWIRQNEGADYWDRQTQVLIGAHQVFKDSIQIVMERFNQSKGVHTWQNMYGCELNDDGTTQGFYQYAYDGEDFVSLDKNTLTWTAANPQAVITKHKWEALAVAEQNKGYLENTCIEWLKKYVAYGKDTLERKVSPQVSLLQKDPSSPVTCHATGFYPSGVTITWQKNGQDHDEDVDLGELLPNEDGSFQRMSTLNVGPDEWKNNRFSCVVEHQDKTIRKTEDDIITNFD
 >5D9S.pdb
 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRW
@@ -1086,3 +1086,55 @@ GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT
 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRW
 >7P3E.pdb
 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
+>3FT3.pdb
+GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWVAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE
+>6APN.pdb
+SGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGAYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRW
+>6E1I.pdb
+GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGAYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCHVHHEGLPEPLTLRWENLYF
+>6JQ2.pdb
+GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRW
+>6KX9.pdb
+EFELHTLRYISTAMTDPGPGQPWYVDVGYVDGELFTHYNSTARRAVPRTEWIAANTDQQYWDSETQTSQRTEQIDRDGLGTLQRRYNQTGGSHTVQLMYGCDILEDGTIRGYSQDAYDGRDFIAFDKDTMTFTAAVPEAVPTKRKWEEGDYAEGLKQYLEETCVEWLRRYVEYGKAELGRRERPEVRVWGKEADGILTLSCRAHGFYPRPIAVSWLKDGAVQGQDAQSGGIVPNGDGTYHTWVTIDAQPGDGDKYQCRVEHASLPQPGLYSW
+>6LUP.pdb
+GSHSLRYFFTWSTAGSGIPEFVAVGYVDDQQFVQYDSDRKEMIPRQRWVKESEGPEYWERETQTLRGWEPWGKANIDILSKRTNQTGGIHTYQLMCGCELRDDGSSNTGFVQHAWDSTDFISLDKDKMVWVTPVTWGEITKNKWDRDMAFNQGTKGYLEGICIEWLQKYLKNGNVELRPVKPSVTFTSVRGNKQLSCVATGFYPHSIEVNLFRDSAKIDETESTGVRPNHDGSYQIHRSTEFDPNSQAKYSCVVDHDGLGQQLVVFY
+>6M24.pdb
+GSHSMRYFYTSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAASPRMEQRAPWMGQVEPEYWDQQTQIAKDTAQTFRVNLNTALRYYNQSAAGSHTFQTMFGCEVWADGRFFHGYRQYAYDGADYIALNEDLRSWTAADTAAQNTQRKWEAAGEAERHRAYLERECVEWLRRYLEMGKETLQRADPPKAHVTHHPASDREATLRCWALGFYPAEISLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCRVQHEGLPEPLTLTW
+>6M2J.pdb
+GSHSMRYFYTSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAASPRMEQRAPWMGQVEPEYWDQQTQIAKDTAQTFRVNLNTALRYYNQSAAGSHTFQTMFGCEVWADGRFFHGYRQYAYDGADYIALNEDLRSWTAADTAAQNTQRKWEAAGEAERHRAYLERECVEWLRRYLEMGKETLQRADPPKAHVTHHPASDREATLRCWALGFYPAEISLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCRVQHEGLPEPLTLTW
+>6M2K.pdb
+GSHSMRYFYTSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAASPRMEQRAPWMGQVEPEYWDQQTQIAKDTAQTFRVNLNTALRYYNQSAAGSHTFQTMFGCEVWADGRFFHGYRQYAYDGADYIALNEDLRSWTAADTAAQNTQRKWEAAGEAERHRAYLERECVEWLRRYLEMGKETLQRADPPKAHVTHHPASDREATLRCWALGFYPAEISLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCRVQHEGLPEPLTLTW
+>7CIQ.pdb
+GSHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQDAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
+>7CJQ.pdb
+GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWE
+>7DC6.pdb
+GSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRFDSDSASRRMEPRAPWIEQEGPEYWDRNTRIAEDNAQAFRVDLQTALRYYNQSEAGSHTIQWMHGCDVGPDGRLLRGYSQLAYDGADYIALNEDLRSWTAADTAAQITRRKWEAAGEAERYRNYVEGECVEWLRRYLENGKETLQRAETPDTRVTRHPISDQKVTLRCWALGFYPAEITLTWQQDGEDLTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPEPLTRSWE
+>7EM9.pdb
+GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQDYWDRETRKQRDTSQTYRVGLKNLRGYYNQSEAGSHTYQSMYGCYLGPDGLLLRGYRQYAYDGADYIALNEDLRSWTAADTAAQITKRKWETANVAERRRSYLQGLCVESLREYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD
+>7EMA.pdb
+GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQDYWDRETRKQRDTSQTYRVGLKNLRGYYNQSEAGSHTYQSMYGCYLGPDGLLLRGYRQYAYDGADYIALNEDLRSWTAADTAAQITKRKWETANVAERRRSYLQGLCVESLREYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD
+>7EMB.pdb
+GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQDYWDRETRKQRDTSQTYRVGLKNLRGYYNQSEAGSHTYQSMYGCYLGPDGLLLRGYRQYAYDGADYIALNEDLRSWTAADTAAQITKRKWETANVAERRRSYLQGLCVESLREYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD
+>7EMC.pdb
+GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQDYWDRETRKQRDTSQTYRVGLKNLRGYYNQSEAGSHTYQSMYGCYLGPDGLLLRGYRQYAYDGADYIALNEDLRSWTAADTAAQITKRKWETANVAERRRSYLQGLCVESLREYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD
+>7EMD.pdb
+GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQDYWDRETRKQRDTSQTYRVGLKNLRGYYNQSEAGSHTYQSMYGCYLGPDGLLLRGYRQYAYDGADYIALNEDLRSWTAADTAAQITKRKWETANVAERRRSYLQGLCVESLREYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD
+>7L1B.pdb
+GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW
+>7MLE.pdb
+GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELS
+>7N9J.pdb
+PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPP
+>7R7Y.pdb
+GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDGETRNMKASAQTYRENLRIALRYYNQSEAGSHIIQVMYGCDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
+>7S8Q.pdb
+GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE
+>7S8R.pdb
+GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE
+>7S8S.pdb
+GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW
+>7U21.pdb
+GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE
+>7WJ2.pdb
+GSHSMRYFSTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQWMFGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP

helper_files/Exclude_files/template_sequences.fasta

@@ -170,3 +170,15 @@ MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEG
 MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFHTSVSRPGRGEPRFITVGYVDDTLFVRFDSDAASPREEPRAPWIEQEGPEHWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHTLQNMYGCDVGPDGRLLRGYHQDAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGECVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSLTA
 >HLA-B*15:02
 MRVTAPRTVLLLLSGALALTETWAGSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDRNTQISKTNTQTYRESLRNLRGYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGKGGSYSQAASSDSAQGSDVSLTA
+>Gici-UAA*01
+MLSVILLGLLCGGASAGSHSLRYFFTWSTAGSGIPEFVAVGYVDDQQFVQYDSDRKEMIPRQRWVKESEGPEYWERETQTLRGWEPWGKANIDILSKRTNQTGGIHTYQLMCGCELRDDGSSNTGFVQHAWDSTDFISLDKDKMVWVTPVTWGEITKNKWDRDMAFNQGTKGYLEGICIEWLQKYLKNGNVELRPVKPSVTFTSVRGNKQLSCVATGFYPHSIEVNLFRDSAKIDETESTGVRPNHDGSYQIHRSTEFDPNSQAKYSCVVDHDGLGQQLVVFYEPKTSSMLPVIIGVVVVIVLVIIAVIAGVVWYKKKAGQKTGYNPAKTSDKGDSSSSSLATA
+>RLA-A*01
+MGSIPPRTLLLLLAGALTLKDTQAGSHSMRYFYTSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAASPRMEQRAPWMGQVEPEYWDQQTQIAKDTAQTFRVNLNTALRYYNQSAAGSHTFQTMFGCEVWADGRFFHGYRQYAYDGADYIALNEDLRSWTAADTAAQNTQRKWEAAGEAERHRAYLERECVEWLRRYLEMGKETLQRADPPKAHVTHHPASDREATLRCWALGFYPAEISLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCRVQHEGLPEPLTLTWEPPAQPTALIVGIVAGVLGVLLILGAVVAVVRRKKHSSDGKGGRYTPAAGGHRDQGSDDSLMP
+>DLA-88*001:04
+MEVVMPRALLVLLSAALAVTLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPSPLSTIVIVSIAALVLLVVSGVIGAVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTAPRV
+>Aime-128
+MQVVMTRTLVLLLSGALAVTETWAGSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRFDSDSASRRMEPRAPWIEQEGPEYWDRNTRIAEDNAQAFRVDLQTALRYYNQSEAGSHTIQWMHGCDVGPDGRLLRGYSQLAYDGADYIALNEDLRSWTAADTAAQITRRKWEAAGEAERYRNYVEGECVEWLRRYLENGKETLQRAETPDTRVTRHPISDQKVTLRCWALGFYPAEITLTWQQDGEDLTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPEPLTRSWEPPPQPTITVPITCIIAGLVLLTVTVGIGAVIRRRRHSGGKGPSYSHAARDDSAQGSDVSLTVPKV
+>SLA-1*01:01
+MGPGALFLLLSGTLALTGTQAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQDYWDRETRKQRDTSQTYRVGLKNLRGYYNQSEAGSHTYQSMYGCYLGPDGLLLRGYRQYAYDGADYIALNEDLRSWTAADTAAQITKRKWETANVAERRRSYLQGLCVESLREYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVAGAMVAGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV
+>HLA-C*14:02
+MRVMAPRTLILLLSGALALTETWACSHSMRYFSTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQWMFGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDESLIACKA

helper_files/MHC_data.fasta

@@ -21014,6 +21014,8 @@ MAVMAPRTLLLVLSGVLALTQTRAGSHSMSYFYTYMSRPGRGEPRFVAVGYVDDTQFVRFDSDAASQRMEPRAPWVEQEG
 MEVVMPRALLVLLSAALAVTLTRAGSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEEQTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGADYLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLTDPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPSPLSTIVIVSIAALVLLVVAGVIGAVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTAPRV
 >DLA-64*001:01:01
 MEVVMPRALLVLLSAALAVTLTRAGSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEEQTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGADYLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQRTDPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPSPLSTIVIVSIAALVLLVVAGVIGAVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTAPRV
+>DLA-88*001:04
+MEVVMPRALLVLLSAALAVTLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPSPLSTIVIVSIAALVLLVVSGVIGAVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTAPRV
 >Mamu-A1*004:08
 MAVMAPRTLLLVLSGVLALTQTRAGSHSMSYFYTYMSRPGRGEPRFVAVGYVDDTQFVRFDSDAASQRMEPRAPWVEQEGPEYWDRETQKMKTATQMAPVALRNLRGYYNQSEAGSHTYQVMYGCDLGPDGRLLRGYEQFAYDGKDYIALNDDLRSWTAADLAAQNTQRKWEAAGVAEQHRTYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPVSDYEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGKEHRYTCHVQHEGLPEPLTLRWEPSSQSTIPIVGIIAGLVLLGAVVTGAVVAVVMWRRKSSDRKGGSYSQAASSDSAQGSDVSLTACKV
 >Mamu-A1*008:04
@@ -22402,3 +22404,9 @@ MGGALGLGLWLLLGVLGGAASEPHSLRYFDTGVSDPSPGVPRFVSVGYVDGHLIDHYDSETQRTEPRADWFAANTDQQYW
 MDVRLVPILLILGASAVYSGSHSLRYYYTAVSDRAFGLPEFSIVGYVDDTQSFRYNSDNQKAEPATQWMKQKEGPEYWEQQTQIAKGSEPVHKHDVKTAMDRFNQTSGTHSLQVMYGCELREDNSIRSYHQYGYDGREFIALDTERWVYVPSVREAQLTEQKWNSPEVNAPERNKNYLQNLCIEGLKRYLSYGRAELERRVHPHVRISDHQSDDATELRCHAYGFYPREIDVKWVKNGRADVHSEAAKEILPNPDGSYQLRVTAEITPSEGDSYACHVEHSSLKEKLIVVWPGPNKDGNNMGIIIAVVVAAVVVIAAVVGFVFYKKRNKKAYMKTASGETASNESADSVKA
 >PTAL-N*01:01
 MQVMGPRTLLLLLSGALALTETWAGFHSLRYFYTAWSRPGSGEPRFVAVGYVDDTQFVRFDSDNASPRAEPRAPWMDLVEQQDPQYWDRNTRNARDAAQTYRVGLDNVRGYYNQSEAGSHTIQRMYGCDVGPHGRLLRGYDQLAYDGADYIALNEDLRSWTAADLAAQNTRRKWEEAGYAERDRAYLEGECVEWLLKHLENGRETLLRADPPKTHITHHPISDREVTLRCWALGFYPEEITLTWQHDGEDQTQEMELVETRPDGNGAFQKWAALVVPSGEEQRYTCHVQHEGLPQPLTLRWEPPPPATIPIVGVIAALVLLGVVVLGAVFGAVMWRRKRSGGKGGIYVQAANTDSAQGSDVSLTASKA
+>Gici-UAA*01
+MLSVILLGLLCGGASAGSHSLRYFFTWSTAGSGIPEFVAVGYVDDQQFVQYDSDRKEMIPRQRWVKESEGPEYWERETQTLRGWEPWGKANIDILSKRTNQTGGIHTYQLMCGCELRDDGSSNTGFVQHAWDSTDFISLDKDKMVWVTPVTWGEITKNKWDRDMAFNQGTKGYLEGICIEWLQKYLKNGNVELRPVKPSVTFTSVRGNKQLSCVATGFYPHSIEVNLFRDSAKIDETESTGVRPNHDGSYQIHRSTEFDPNSQAKYSCVVDHDGLGQQLVVFYEPKTSSMLPVIIGVVVVIVLVIIAVIAGVVWYKKKAGQKTGYNPAKTSDKGDSSSSSLATA
+>RLA-A*01
+MGSIPPRTLLLLLAGALTLKDTQAGSHSMRYFYTSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAASPRMEQRAPWMGQVEPEYWDQQTQIAKDTAQTFRVNLNTALRYYNQSAAGSHTFQTMFGCEVWADGRFFHGYRQYAYDGADYIALNEDLRSWTAADTAAQNTQRKWEAAGEAERHRAYLERECVEWLRRYLEMGKETLQRADPPKAHVTHHPASDREATLRCWALGFYPAEISLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCRVQHEGLPEPLTLTWEPPAQPTALIVGIVAGVLGVLLILGAVVAVVRRKKHSSDGKGGRYTPAAGGHRDQGSDDSLMP
+>Aime-128
+MQVVMTRTLVLLLSGALAVTETWAGSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRFDSDSASRRMEPRAPWIEQEGPEYWDRNTRIAEDNAQAFRVDLQTALRYYNQSEAGSHTIQWMHGCDVGPDGRLLRGYSQLAYDGADYIALNEDLRSWTAADTAAQITRRKWEAAGEAERYRNYVEGECVEWLRRYLENGKETLQRAETPDTRVTRHPISDQKVTLRCWALGFYPAEITLTWQQDGEDLTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPEPLTRSWEPPPQPTITVPITCIIAGLVLLTVTVGIGAVIRRRRHSGGKGPSYSHAARDDSAQGSDVSLTVPKV