Add 7R7V

KavrakiLab · Apr 20, 2023 · 64d80d4 · 64d80d4
1 parent 636ec56
commit 64d80d4
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Showing 7 changed files with 5,161 additions and 2,783 deletions.
diff --git a/helper_files/Exclude_files/Template_DB_excluded.csv b/helper_files/Exclude_files/Template_DB_excluded.csv
diff --git a/helper_files/Exclude_files/a_chain_sequences.fasta b/helper_files/Exclude_files/a_chain_sequences.fasta
diff --git a/helper_files/Exclude_files/template_sequences.fasta b/helper_files/Exclude_files/template_sequences.fasta
diff --git a/helper_files/Proper_files/Template_DB.csv b/helper_files/Proper_files/Template_DB.csv
@@ -5,6 +5,7 @@ pdb_code,MHC,peptide,peptide_length,Major_anchors,Secondary_anchors
 3PWU.pdb,BoLA-2*018:01,IPAYGVLTI,9,"2,9","2,6,9"
 2XFX.pdb,BoLA-6*013:01,VGYPKVKEEML,11,"2,11","1,11,5,2,10"
 7CJQ.pdb,DLA-88*001:04,RTISYTYPF,9,"2,9","2,9"
+5F1I.pdb,DLA-88*508:01,KLFSGELTK,9,"2,9","2,9"
 4ZUS.pdb,Eqca-N*006:02,QAEVLQERLEW,11,"2,11","1,11,2,10"
 4ZUT.pdb,Eqca-N*006:02,GSQKLTTGNCNW,12,"2,12","1,2,12"
 4ZUU.pdb,Eqca-N*006:02,CTSEEMNAF,9,"2,9","1,2,9"
@@ -386,7 +387,6 @@ pdb_code,MHC,peptide,peptide_length,Major_anchors,Secondary_anchors
 7S8Q.pdb,HLA-A*11:01,KTNGNAFIGK,10,"2,10","1,2,10"
 7S8R.pdb,HLA-A*11:01,SALEWIKNK,9,"2,9","9,1,2"
 7S8S.pdb,HLA-A*11:01,RVLVNGTFLK,10,"2,10","7,1,2,10"
-5F1I.pdb,DLA-88*508:01,KLFSGELTK,9,"2,9","2,9"
 2BCK.pdb,HLA-A*24:02,VYGFVRACL,9,"2,9","5,2,9"
 3I6L.pdb,HLA-A*24:02,QFKDNVILL,9,"2,9","2,9"
 3NFN.pdb,HLA-A*24:02,RYPLTFGWCF,10,"2,10","10,2"
@@ -577,6 +577,7 @@ pdb_code,MHC,peptide,peptide_length,Major_anchors,Secondary_anchors
 3W39.pdb,HLA-B*52:01,TAFTIPSI,8,"2,8","1,2,8"
 1A1M.pdb,HLA-B*53:01,TPYDINQML,9,"2,9","1,2,9"
 1A1O.pdb,HLA-B*53:01,KPIVQYDNF,9,"2,9","2,9"
+7R7V.pdb,HLA-B*53:01,QASQEVKNW,9,"2,9","2,7,9"
 2RFX.pdb,HLA-B*57:01,LSSPVTKSF,9,"2,9","2,9,7"
 2YPK.pdb,HLA-B*57:01,KAFSPEVIPMF,11,"2,11","11,2"
 3UPR.pdb,HLA-B*57:01,HSITYLLPV,9,"2,9","2,9"
@@ -664,7 +665,6 @@ pdb_code,MHC,peptide,peptide_length,Major_anchors,Secondary_anchors
 3RWI.pdb,Mamu-B*017:01:01:01,GSHLEVQGYW,10,"3,10","2,3,10"
 3RWJ.pdb,Mamu-B*017:01:01:01,HLEVQGYW,8,"1,8","1,8"
 5H5Z.pdb,Onmy-UBA*18:01,FANFCLMMI,9,"2,9","2,9"
-7EDO.pdb,Trvu-UB*01:01,CNVTLNYP,8,"2,8","2,8"
 6ILC.pdb,PTAL-N*01:01,DFANTFLP,8,"2,8","5,2,8"
 6ILF.pdb,PTAL-N*01:01,DYINTNLVP,9,"2,9","1,2,9"
 6ILG.pdb,PTAL-N*01:01,DFANTFLL,8,"2,8","5,2,8"
@@ -697,4 +697,5 @@ pdb_code,MHC,peptide,peptide_length,Major_anchors,Secondary_anchors
 5YLX.pdb,SLA-1*15:01,TMPPGFELY,9,"2,9","1,2,9"
 6A6H.pdb,SLA-2*04:02:01,MTAHIVVPY,9,"2,9","1,2,9"
 5NQ2.pdb,SLA-2*11:04,IAYERMCNI,9,"2,9","2,9,6"
+7EDO.pdb,Trvu-UB*01:01,CNVTLNYP,8,"2,8","2,8"
 6A2B.pdb,Xela-UAAg,YMMPRHWPI,9,"2,9","2,3,6,9"
diff --git a/helper_files/Proper_files/a_chain_sequences.fasta b/helper_files/Proper_files/a_chain_sequences.fasta
diff --git a/helper_files/Proper_files/template_sequences.fasta b/helper_files/Proper_files/template_sequences.fasta
diff --git a/new_templates_final/7R7V.pdb b/new_templates_final/7R7V.pdb