🧬 Bioinformatician at the Central Public Health Laboratories (CPHL), Uganda
🚀 Passionate about Pathogen genomics, outbreak response, and Public health surveillance
- Develop and implement NGS-based pipelines for infectious disease surveillance
- Lead genomic analyses for HIV, Mpox, Ebola, AMR and Viral pathogens
- Build scalable bioinformatics workflows for real-time outbreak response
- Apply metagenomics and wastewater surveillance for public health insights
Nextflow • Python • R • Snakemake • ARTIC pipeline
Kraken2 • docker • singularity • iTOL • Nextstrain
- 🧪 HIV-DRIVES: Pipeline for HIV drug resistance surveillance
- 🌍 Mpox Genomics (Uganda 2024–2025): Transmission dynamics & phylogenetics
- 💧 Wastewater Metagenomics: AMR and pathogen surveillance
- Public health genomics infrastructure in Africa
- Open-source bioinformatics tools
- Training & capacity building