Brain Decoding Cookbook

Codebase for brain decoding analysis.

Environment Setup

You can setup environment with uv:

$ uv sync

To run visualization code, install the optional dependencies:

$ uv sync --extra viz

Note If you use CUDA, specify the PyTorch index according to your CUDA version.

# example
torch = [
    { index = "pytorch-cu124", marker = "sys_platform == 'linux' or sys_platform == 'win32'" },
]
...
[[tool.uv.index]]
name = "pytorch-cu124"
url = "https://download.pytorch.org/whl/cu124"
explicit = true

The candidate custom index URLs are listed here.