Test ubuntu #6
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| name: morphMan CI | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
| branches: | ||
| - '**' | ||
| schedule: | ||
| - cron: '0 8 * * *' | ||
| env: | ||
| CACHE_NUMBER: 1 # Increase to reset cache | ||
| jobs: | ||
| check-code: | ||
| name: Check code | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: '3.10' | ||
| - name: Install dependencies and project | ||
| run: | | ||
| python -m pip install --upgrade pip setuptools | ||
| python -m pip install '.[test]' | ||
| - name: Run linting and checks | ||
| run: | | ||
| bash linting.sh | ||
| test-code: | ||
| needs: check-code | ||
| name: Test morphMan (${{ matrix.python-version }}, ${{ matrix.os }}) | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| matrix: | ||
| os: [ "ubuntu-latest" ] | ||
| python-version: [ "3.10" ] | ||
| defaults: | ||
| run: # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell | ||
| shell: bash -el {0} | ||
| # steps: | ||
| # - uses: actions/checkout@v4 | ||
| # - uses: conda-incubator/setup-miniconda@v3 | ||
| # with: | ||
| # mamba-version: '*' | ||
| # channels: conda-forge,vmtk,defaults | ||
| # channel-priority: flexible | ||
| # activate-environment: morphman | ||
| # environment-file: environment.yml | ||
| # python-version: ${{ matrix.python-version }} | ||
| # - run: | | ||
| # conda info | ||
| # conda list | ||
| # conda config --show-sources | ||
| # conda config --show | ||
| # | ||
| # - name: Install morphMan | ||
| # run: | | ||
| # python -m pip install '.[test]' | ||
| # | ||
| ## - uses: actions/cache@v3 | ||
| # with: | ||
| # path: ${{ matrix.prefix }} | ||
| # key: ${{ matrix.label }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | ||
| # restore-keys: ${{ matrix.label }}-${{ env.CACHE_NUMBER }}- | ||
| # | ||
| # - run: mamba env update -n morphman -f environment.yml | ||
| # | ||
| # - name: Install morphMan | ||
| # run: mamba run -n morphman python -m pip install '.[test]' | ||
| # | ||
| # - name: Run tests | ||
| # run: mamba run -n morphman python -m pytest tests | ||
| # | ||
| # - name: Upload coverage report to Codecov | ||
| # if: matrix.os == 'ubuntu-latest' | ||
| # uses: codecov/codecov-action@v3 | ||
| # with: | ||
| # token: ${{ secrets.CODECOV_TOKEN }} | ||
| # files: ./coverage.xml | ||
| # fail_ci_if_error: false | ||
| # verbose: true | ||
