Refactor morphMan #5
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| name: morphMan CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - '**' | |
| schedule: | |
| - cron: '0 8 * * *' | |
| env: | |
| CACHE_NUMBER: 1 # Increase to reset cache | |
| jobs: | |
| check-code: | |
| name: Check code | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies and project | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| python -m pip install '.[test]' | |
| - name: Run linting and checks | |
| run: | | |
| bash linting.sh | |
| test-code: | |
| needs: check-code | |
| name: Test morphMan (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ "ubuntu-latest", "macos-latest" ] | |
| python-version: [ "3.10" ] | |
| defaults: | |
| run: # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| channels: conda-forge,vmtk,defaults | |
| channel-priority: flexible | |
| activate-environment: morphman | |
| environment-file: environment.yml | |
| python-version: ${{ matrix.python-version }} | |
| - run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| - name: Install morphMan | |
| run: | | |
| python -m pip install '.[test]' | |
| # - uses: actions/cache@v3 | |
| # with: | |
| # path: ${{ matrix.prefix }} | |
| # key: ${{ matrix.label }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| # restore-keys: ${{ matrix.label }}-${{ env.CACHE_NUMBER }}- | |
| # | |
| # - run: mamba env update -n morphman -f environment.yml | |
| # | |
| # - name: Install morphMan | |
| # run: mamba run -n morphman python -m pip install '.[test]' | |
| # | |
| # - name: Run tests | |
| # run: mamba run -n morphman python -m pytest tests | |
| # | |
| # - name: Upload coverage report to Codecov | |
| # if: matrix.os == 'ubuntu-latest' | |
| # uses: codecov/codecov-action@v3 | |
| # with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| # files: ./coverage.xml | |
| # fail_ci_if_error: false | |
| # verbose: true |