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Updated to reflect new LearnBase interface for getobs and ObsDim #50

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254 changes: 254 additions & 0 deletions Manifest.toml
Original file line number Diff line number Diff line change
@@ -0,0 +1,254 @@
# This file is machine-generated - editing it directly is not advised

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2 changes: 1 addition & 1 deletion Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"

[compat]
DataFrames = "1"
LearnBase = "0.4"
LearnBase = "0.5"
MLLabelUtils = "0.5"
StatsBase = "0.33"
julia = "1"
Expand Down
22 changes: 10 additions & 12 deletions src/MLDataPattern.jl
Original file line number Diff line number Diff line change
@@ -1,21 +1,19 @@
module MLDataPattern

using StatsBase
using LearnBase
using MLLabelUtils

using LearnBase: ObsDimension
import StatsBase: nobs
import LearnBase: getobs, getobs!, gettarget, gettargets, targets, datasubset, default_obsdim, DataView,
AbstractObsView, AbstractBatchView, DataIterator, AbstractDataIterator, ObsIterator, BatchIterator
import LearnBase: nobs, getobs, getobs!, gettarget, gettargets, targets, default_obsdim,
AbstractDataIterator

using LearnBase: _check_nobs
using Base.Cartesian
using Random
using SparseArrays

export

ObsDim,

nobs,
getobs,
getobs!,
Expand Down Expand Up @@ -58,13 +56,12 @@ export
eachobs,
eachbatch

obsdim_string(::ObsDim.First) = ":first"
obsdim_string(::ObsDim.Last) = ":last"
obsdim_string(::ObsDim.Constant{D}) where {D} = string(D)
obsdim_string(::ObsDim.Undefined) = "\"NA\""
obsdim_string(obsdim::Tuple) = string("(", join(map(obsdim_string, obsdim), ", "), ")")
# obsdim_string(::ObsDim.First) = ":first"
# obsdim_string(::ObsDim.Last) = ":last"
# obsdim_string(::ObsDim.Constant{D}) where {D} = string(D)
# obsdim_string(::ObsDim.Undefined) = "\"NA\""
# obsdim_string(obsdim::Tuple) = string("(", join(map(obsdim_string, obsdim), ", "), ")")

include("container.jl")
include("datasubset.jl")
include("randobs.jl")
include("shuffleobs.jl")
Expand All @@ -76,5 +73,6 @@ include("stratifiedobs.jl")
include("resample.jl")
include("folds.jl")
include("dataiterator.jl")
include("deprecations.jl")

end # module
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